Strain identifier
BacDive ID: 527
Type strain: 
Species: Aurantimonas manganoxydans
Strain Designation: SI85-9A1
Strain history: <- C. Anderson, Oregon Health & Sciences Univ., Dept. Science & Engineering, Beaverton, OR, USA; SI85-9A1 <- B. M. Tebo
NCBI tax ID(s): 287752 (strain), 651183 (species)
version 8.1 (current version)
General
@ref: 16004
BacDive-ID: 527
DSM-Number: 21871
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Aurantimonas manganoxydans SI85-9A1 is a mesophilic, Gram-negative bacterium that was isolated from seawater.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 287752 | strain |
| 651183 | species |
strain history
- @ref: 16004
- history: <- C. Anderson, Oregon Health & Sciences Univ., Dept. Science & Engineering, Beaverton, OR, USA; SI85-9A1 <- B. M. Tebo
doi: 10.13145/bacdive527.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Aurantimonadaceae
- genus: Aurantimonas
- species: Aurantimonas manganoxydans
- full scientific name: Aurantimonas manganoxydans corrig. Anderson et al. 2011
synonyms
@ref synonym 20215 Aurantimonas coralicida 20215 Aurantimonas manganoxidans
@ref: 16004
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Aurantimonadaceae
genus: Aurantimonas
species: Aurantimonas manganoxydans
full scientific name: Aurantimonas manganoxydans Anderson et al. 2011
strain designation: SI85-9A1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.993
Culture and growth conditions
culture medium
- @ref: 16004
- name: AURANTIMONAS MANGANOXYDANS MEDIUM (DSMZ Medium 1326)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1326
- composition: Name: AURANTIMONAS MANGANOXYDANS MEDIUM (DSMZ Medium 1326) Composition: NaCl 17.199 g/l Agar 15.0 g/l MgSO4 x 7 H2O 12.103 g/l HEPES buffer 4.766 g/l Peptone 2.0 g/l CaCl2 x 7 H2O 1.4308 g/l KCl 0.735 g/l Yeast extract 0.5 g/l Ferric ammonium citrate Distilled water
culture temp
- @ref: 16004
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 16004
- sample type: seawater
- geographic location: British Columbia, Vancouver Island, Saanich Inlet
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Safety information
risk assessment
- @ref: 16004
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aurantimonas manganoxydans SI85-9A1 | GCA_000153465 | scaffold | ncbi | 287752 |
| 66792 | Aurantimonas manganoxydans SI85-9A1 DSM 21871 | GCA_001463865 | contig | ncbi | 287752 |
| 66792 | Aurantimonas manganoxydans SI85-9A1 | 287752.3 | wgs | patric | 287752 |
| 66792 | Aurantimonas manganoxydans SI85-9A1 strain DSM 21871 | 287752.4 | wgs | patric | 287752 |
| 66792 | Aurantimonas manganoxydans SI85-9A1 | 2700989460 | draft | img | 287752 |
| 66792 | Aurantimonas manganoxydans SI85-9A1 | 638341009 | draft | img | 287752 |
GC content
- @ref: 16004
- GC-content: 67
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 84.612 | no |
| flagellated | no | 52.11 | no |
| gram-positive | no | 97.548 | no |
| anaerobic | no | 97.211 | no |
| aerobic | yes | 93.355 | no |
| halophile | no | 64.835 | no |
| spore-forming | no | 96.457 | no |
| thermophile | no | 96.634 | yes |
| glucose-util | yes | 92.393 | no |
| glucose-ferment | no | 91.4 | no |
External links
@ref: 16004
culture collection no.: DSM 21871, ATCC BAA 1229
straininfo link
- @ref: 70205
- straininfo: 300721
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 19411418 | Mn(II) oxidation is catalyzed by heme peroxidases in "Aurantimonas manganoxydans" strain SI85-9A1 and Erythrobacter sp. strain SD-21. | Anderson CR, Johnson HA, Caputo N, Davis RE, Torpey JW, Tebo BM | Appl Environ Microbiol | 10.1128/AEM.02890-08 | 2009 | Alphaproteobacteria/*enzymology/metabolism, Bacterial Proteins/chemistry/isolation & purification/*metabolism, Calcium/pharmacology, Chromatography, Liquid, Electrophoresis, Polyacrylamide Gel, Enzyme Activators/pharmacology, Heme/*metabolism, Hydrogen Peroxide/pharmacology, Manganese/*metabolism, Molecular Weight, Oxidation-Reduction, Peroxidase/chemistry/isolation & purification/*metabolism, Sequence Homology, Amino Acid, Tandem Mass Spectrometry | Metabolism |
| Phylogeny | 19768133 | Aurantimonas manganoxydans, sp. nov. and Aurantimonas litoralis, sp. nov.: Mn(II) oxidizing representatives of a globally distributed clade of alpha-Proteobacteria from the order Rhizobiales. | Anderson CR, Dick GJ, Chu ML, Cho JC, Davis RE, Brauer SL, Tebo BM | Geomicrobiol J | 10.1080/01490450902724840 | 2009 | ||
| Phylogeny | 27453213 | Aurantimonas endophytica sp. nov., a novel endophytic bacterium isolated from roots of Anabasis elatior (C. A. Mey.) Schischk. | Liu BB, Wang HF, Li QL, Zhou XK, Zhang YG, Xiao M, Li QQ, Zhang W, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001320 | 2016 | Alphaproteobacteria/*classification/genetics/isolation & purification, Amaranthaceae/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16004 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21871) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21871 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 70205 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID300721.1 | StrainInfo: A central database for resolving microbial strain identifiers |