Strain identifier

BacDive ID: 5179

Type strain: Yes

Species: Tatumella terrea

Strain Designation: BD 877

Strain history: CIP <- 1998, B. Kageyama, Shionogi and Co., Osaka, Japan: strain SHS 2008

NCBI tax ID(s): 419007 (species)

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General

@ref: 5124

BacDive-ID: 5179

DSM-Number: 13701

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Tatumella terrea BD 877 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 419007
  • Matching level: species

strain history

@refhistory
5124<- ATCC <- Shionogi & Co., Ltd.
393261998, B. Kageyama, Shionogi & Co., Osaka, Japan: strain SHS 2008
67770B. Kageyama SHS 2008.
123468CIP <- 1998, B. Kageyama, Shionogi and Co., Osaka, Japan: strain SHS 2008

doi: 10.13145/bacdive5179.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Tatumella
  • species: Tatumella terrea
  • full scientific name: Tatumella terrea (Kageyama et al. 1992) Brady et al. 2010

  • synonyms

    • @ref: 20215
    • synonym: Pantoea terrea

@ref: 5124

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Tatumella

species: Tatumella terrea

full scientific name: Tatumella terrea (Kageyama et al. 1992) Brady et al. 2010

strain designation: BD 877

type strain: yes

Morphology

cell morphology

  • @ref: 123468
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 123468

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5124NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39326MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123468CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
5124positivegrowth28mesophilic
39326positivegrowth25mesophilic
49945positivegrowth30mesophilic
67770positivegrowth30mesophilic
123468positivegrowth25-37mesophilic
123468nogrowth5psychrophilic
123468nogrowth10psychrophilic
123468nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
49945aerobe
123468facultative anaerobe

compound production

  • @ref: 5124
  • compound: 2,5 diketo-D-gulonic acid

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose+builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371amygdalin-builds acid from27613
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
123468mannitol-fermentation29864
123468citrate+carbon source16947
123468glucose+fermentation17234
123468lactose-fermentation17716
123468nitrate+reduction17632
123468nitrite-reduction16301
123468malonate-assimilation15792
123468sodium thiosulfate-builds gas from132112
123468glucose+degradation17234

antibiotic resistance

  • @ref: 123468
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 123468
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12346815688acetoin+
12346817234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
123468oxidase-
123468beta-galactosidase-3.2.1.23
123468alcohol dehydrogenase+1.1.1.1
123468gelatinase-
123468catalase+1.11.1.6
123468lysine decarboxylase-4.1.1.18
123468ornithine decarboxylase-4.1.1.17
123468phenylalanine ammonia-lyase-4.3.1.24
123468tryptophan deaminase-
123468urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123468--------------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KGQ
123468+--+++---++++--------+-++++--+++--+---+---+---+/--+
5124+--+++---++-+----+---+/-+/-+++--+++----------+-------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123468+++++--+----------++-----------+-+---------------+---+--++-++------------+-----++--------+++-------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
5124soilJapanJPNAsia
49945SoilJapanJPNAsia
67770Soil
123468Environment, SoilJapanJPNAsia1973

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
51241Risk group (German classification)
1234681Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pantoea terrea strain JCM 8887 16S ribosomal RNA gene, partial sequenceEF0123661251ena419007
20218Pantoea terrea strain DSM 13701 16S ribosomal RNA gene, partial sequenceFJ7563531502ena419007
5124Pantoea terrea strain LMG 22051 16S ribosomal RNA gene, partial sequenceEF6880071494ena419007

GC content

@refGC-contentmethod
512452.8high performance liquid chromatography (HPLC)
6777052.6high performance liquid chromatography (HPLC)
6777051.9high performance liquid chromatography (HPLC)

External links

@ref: 5124

culture collection no.: DSM 13701, ATCC 31628, CCUG 30161, CIP 105600, JCM 8887, LMG 22051, SHS 2008, CCM 4324, FERM P-5454, NCPPB 3822

straininfo link

  • @ref: 74671
  • straininfo: 44915

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1581180Pantoea punctata sp. nov., Pantoea citrea sp. nov., and Pantoea terrea sp. nov. isolated from fruit and soil samples.Kageyama B, Nakae M, Yagi S, Sonoyama TInt J Syst Bacteriol10.1099/00207713-42-2-2031992Base Composition, Erwinia/classification/*isolation & purification/ultrastructure, Fruit/*microbiology, Gluconates/*metabolism, Microscopy, Electron, Nucleic Acid Hybridization, Phenotype, *Soil MicrobiologyPhenotype
Phylogeny19654354Transfer of Pantoea citrea, Pantoea punctata and Pantoea terrea to the genus Tatumella emend. as Tatumella citrea comb. nov., Tatumella punctata comb. nov. and Tatumella terrea comb. nov. and description of Tatumella morbirosei sp. nov.Brady CL, Venter SN, Cleenwerck I, Vandemeulebroecke K, De Vos P, Coutinho TAInt J Syst Evol Microbiol10.1099/ijs.0.012070-02009Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fruit/microbiology, Molecular Sequence Data, Pantoea/*classification/genetics/isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil MicrobiologyEnzymology
Metabolism29906254Broad-spectrum antimicrobial activity by Burkholderia cenocepacia TAtl-371, a strain isolated from the tomato rhizosphere.Rojas-Rojas FU, Salazar-Gomez A, Vargas-Diaz ME, Vasquez-Murrieta MS, Hirsch AM, De Mot R, Ghequire MGK, Ibarra JA, Estrada-de Los Santos PMicrobiology (Reading)10.1099/mic.0.0006752018Anti-Infective Agents/*metabolism, *Antibiosis, Burkholderia cenocepacia/*isolation & purification/*metabolism, Candida glabrata/*drug effects/growth & development, Gammaproteobacteria/*drug effects/growth & development, Lycopersicon esculentum/growth & development, Rhizosphere, *Soil MicrobiologyPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5124Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13701)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13701
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39326Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17637
49945Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30161)https://www.ccug.se/strain?id=30161
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
74671Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44915.1StrainInfo: A central database for resolving microbial strain identifiers
123468Curators of the CIPCollection of Institut Pasteur (CIP 105600)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105600