Strain identifier

BacDive ID: 5158

Type strain: Yes

Species: Serratia quinivorans

Strain Designation: 4364

Strain history: CIP <- 1981, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 4364

NCBI tax ID(s): 137545 (species)

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General

@ref: 1788

BacDive-ID: 5158

DSM-Number: 4597

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, human pathogen

description: Serratia quinivorans 4364 is a facultative anaerobe, mesophilic, Gram-negative human pathogen that was isolated from champignon.

NCBI tax id

  • NCBI tax id: 137545
  • Matching level: species

strain history

@refhistory
1788<- P.A.D. Grimont; 4364
360791981, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 4364
122111CIP <- 1981, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 4364

doi: 10.13145/bacdive5158.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia quinivorans
  • full scientific name: Serratia quinivorans corrig. (Grimont et al. 1983) Ashelford et al. 2002

  • synonyms

    @refsynonym
    20215Serratia quinivora
    20215Serratia proteamaculans subsp. quinovora

@ref: 1788

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Serratia

species: Serratia quinivorans

full scientific name: Serratia quinivorans (Grimont et al. 1983) Ashelford et al. 2002

strain designation: 4364

type strain: yes

Morphology

cell morphology

  • @ref: 122111
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1788REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36079MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122111CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1788positivegrowth30mesophilic
36079positivegrowth30mesophilic
122111positivegrowth10-30
122111nogrowth5psychrophilic
122111nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122111
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose+builds acid from32528
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
122111citrate+carbon source16947
122111nitrate+reduction17632
122111nitrite-reduction16301
122111malonate-assimilation15792
122111sodium thiosulfate-builds gas from132112
122111glucose+degradation17234

antibiotic resistance

  • @ref: 122111
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 122111
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12211115688acetoin+
12211117234glucose+

enzymes

@refvalueactivityec
122111oxidase-
122111beta-galactosidase+3.2.1.23
122111alcohol dehydrogenase-1.1.1.1
122111catalase+1.11.1.6
122111lysine decarboxylase+4.1.1.18
122111ornithine decarboxylase+4.1.1.17
122111tryptophan deaminase-
122111urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122111+--+++---++++-+-++--+/-+----+/-+++++-+/-++--+/-++/------+++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
1788champignon
46040Mushroom
122111MushroomFranceFRAEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Fungi
  • Cat3: #Mushroom

taxonmaps

  • @ref: 69479
  • File name: preview.99_1313.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_106;97_324;98_1038;99_1313&stattab=map
  • Last taxonomy: Serratia
  • 16S sequence: AJ233435
  • Sequence Identity:
  • Total samples: 32155
  • soil counts: 4695
  • aquatic counts: 7179
  • animal counts: 15622
  • plant counts: 4659

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
1788yes, in single cases1Risk group (German classification)
1221111Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Serratia proteamaculans 16S rRNA gene (strain DSM 4597)AJ2334351508ena137545
20218Serratia quinivorans strain LMG 7887 16S ribosomal RNA gene, partial sequenceAF2868671464ena137545

External links

@ref: 1788

culture collection no.: CCUG 14187, CIP 8195, DSM 4597, ATCC 33765, CIP 81.95, LMG 7887, NCTC 11544, CIP 103237

straininfo link

  • @ref: 74650
  • straininfo: 4959

literature

  • topic: Phylogeny
  • Pubmed-ID: 25281728
  • title: Serratia myotis sp. nov. and Serratia vespertilionis sp. nov., isolated from bats hibernating in caves.
  • authors: Garcia-Fraile P, Chudickova M, Benada O, Pikula J, Kolarik M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.066407-0
  • year: 2014
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Caves, Chiroptera/*microbiology, Czech Republic, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Serratia/*classification/genetics/isolation & purification
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1788Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4597)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4597
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36079Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11262
46040Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 14187)https://www.ccug.se/strain?id=14187
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74650Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID4959.1StrainInfo: A central database for resolving microbial strain identifiers
122111Curators of the CIPCollection of Institut Pasteur (CIP 81.95)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2081.95