Strain identifier

BacDive ID: 5106

Type strain: No

Species: Salmonella enterica subsp. enterica

Strain Designation: F98

Strain history: CIP <- 2011, CECT <- 1991, NCTC <- 1989, P.A. Barrow, Inst. Animal Health, Houghton: strain F98

NCBI tax ID(s): 59201 (subspecies)

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General

@ref: 2182

BacDive-ID: 5106

DSM-Number: 26529

keywords: Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped

description: Salmonella enterica subsp. enterica F98 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from chicken alimentary tract.

NCBI tax id

  • NCBI tax id: 59201
  • Matching level: subspecies

strain history

@refhistory
2182<- CECT <- NCTC <- P.A. Barrow
119036CIP <- 2011, CECT <- 1991, NCTC <- 1989, P.A. Barrow, Inst. Animal Health, Houghton: strain F98

doi: 10.13145/bacdive5106.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. enterica
  • full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    • @ref: 20215
    • synonym: Salmonella choleraesuis subsp. choleraesuis

@ref: 2182

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. enterica

full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

strain designation: F98

type strain: no

Morphology

cell morphology

  • @ref: 119036
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2182COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
2182NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
41047MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119036CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119036CIP Medium 348yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=348

culture temp

@refgrowthtypetemperature
2182positivegrowth37
41047positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 119036
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis
11903617632nitrate+reduction
11903616301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideyes
11903635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
119036oxidase-
119036catalase-1.11.1.6
119036urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119036-+++-+--+-++--------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
2182--++++---+-++-+--+-+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
2182chicken alimentary tractUnited KingdomGBREurope
119036Chicken alimentary tract

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body-Site#Gastrointestinal tract#Stomach

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
21822Risk group (German classification)
1190362Risk group (French classification)

External links

@ref: 2182

culture collection no.: DSM 26529, CECT 4156, CIP 110278, NCTC 12190, WDCM 00122

straininfo link

  • @ref: 74600
  • straininfo: 91288

Reference

@idauthorscataloguedoi/urltitle
2182Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26529)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26529
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41047Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8119
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
74600Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID91288.1StrainInfo: A central database for resolving microbial strain identifiers
119036Curators of the CIPCollection of Institut Pasteur (CIP 110278)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110278