Strain identifier

BacDive ID: 5086

Type strain: No

Species: Providencia stuartii

Strain Designation: 495

Strain history: <- ATCC <- R. Johnson, 495 <- CDC, N-1083

NCBI tax ID(s): 588 (species)

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General

@ref: 3198

BacDive-ID: 5086

DSM-Number: 7520

keywords: genome sequence, Bacteria, mesophilic, motile

description: Providencia stuartii 495 is a mesophilic, motile bacterium of the family Morganellaceae.

NCBI tax id

  • NCBI tax id: 588
  • Matching level: species

strain history

  • @ref: 3198
  • history: <- ATCC <- R. Johnson, 495 <- CDC, N-1083

doi: 10.13145/bacdive5086.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Providencia
  • species: Providencia stuartii
  • full scientific name: Providencia stuartii (Buttiaux et al. 1954) Ewing 1962 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Proteus stuartii

@ref: 3198

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Morganellaceae

genus: Providencia

species: Providencia stuartii

full scientific name: Providencia stuartii (Buttiaux et al. 1954) Ewing 1962

strain designation: 495

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.62
6948099.959negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3198TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
3198COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 3198
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.932

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase+4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3198----+--++--+-+-------

Isolation, sampling and environmental information

isolation

  • @ref: 3198
  • country: USA
  • origin.country: USA
  • continent: North America

Safety information

risk assessment

  • @ref: 3198
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Providencia stuartii ATCC 33672GCA_000754345completencbi588
66792Providencia stuartii strain ATCC 33672588.36plasmidpatric588

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.969no
flagellatedyes62.492no
gram-positiveno98.331no
anaerobicno97.697no
aerobicyes82.442no
halophileno91.212no
spore-formingno96.187no
glucose-utilyes91.326no
thermophileno96.814yes
glucose-fermentyes86.739yes

External links

@ref: 3198

culture collection no.: DSM 7520, ATCC 33672, CDC N1083

straininfo link

  • @ref: 74581
  • straininfo: 40612

literature

  • Pubmed-ID: 25342690
  • title: Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672.
  • authors: Frey KG, Bishop-Lilly KA, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, Xu Y, Johnson SL
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.01082-14
  • year: 2014

Reference

@idauthorscataloguedoi/urltitle
3198Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7520)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7520
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74581Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40612.1StrainInfo: A central database for resolving microbial strain identifiers