Strain identifier

BacDive ID: 4976

Type strain: Yes

Species: Kluyvera cryocrescens

Strain Designation: CL 248/74, 2065-78

Strain history: CIP <- 1982, ATCC <- 1978, CDC: strain 2065-78 <- B. Holmes, London, UK: strain CL 248/74

NCBI tax ID(s): 1218112 (strain), 580 (species)

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General

@ref: 1783

BacDive-ID: 4976

DSM-Number: 4588

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Kluyvera cryocrescens CL 248/74 is an aerobe, mesophilic bacterium that was isolated from Human.

NCBI tax id

NCBI tax idMatching level
580species
1218112strain

strain history

@refhistory
1783<- CIP <- ATCC
67770R. Sakazaki 163 <-- CDC 2065-78 <-- B. Holmes CL 248/74.
118799CIP <- 1982, ATCC <- 1978, CDC: strain 2065-78 <- B. Holmes, London, UK: strain CL 248/74

doi: 10.13145/bacdive4976.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Kluyvera
  • species: Kluyvera cryocrescens
  • full scientific name: Kluyvera cryocrescens Farmer et al. 1981

@ref: 1783

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Kluyvera

species: Kluyvera cryocrescens

full scientific name: Kluyvera cryocrescens Farmer et al. 1981

strain designation: CL 248/74, 2065-78

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1783NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37929MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
118799CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1783positivegrowth30mesophilic
37929positivegrowth30mesophilic
46883positivegrowth30mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46883
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine+degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid+builds acid from
68374Potassium 5-ketogluconate+builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose+builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose+builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose+builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose+builds acid from
6837430911sorbitol-builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68374L-aspartate arylamidase+3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase+3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase+4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
46883+----++--+++-+--+-++-+-++++-+--+

Isolation, sampling and environmental information

isolation

@refsample type
46883Human
67770Kitchen food, Persian Gulf
118799Human

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_85.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_78;99_85&stattab=map
  • Last taxonomy: Enterobacteriaceae
  • 16S sequence: AF310218
  • Sequence Identity:
  • Total samples: 636
  • soil counts: 14
  • aquatic counts: 44
  • animal counts: 555
  • plant counts: 23

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
17832Risk group (German classification)
1187991Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Kluyvera cryocrescens 16S ribosomal RNA gene, partial sequenceAF3102181459ena580
20218Kluyvera cryocrescens gene for 16S rRNA, partial sequence, strain: NBRC 102467AB6818091465ena580

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kluyvera cryocrescens NBRC 1024671218112.3wgspatric1218112
66792Kluyvera cryocrescens strain NCTC12993580.16wgspatric580
66792Kluyvera cryocrescens NBRC 1024672731957624draftimg1218112
67770Kluyvera cryocrescens NBRC 102467GCA_001571285contigncbi1218112
67770Kluyvera cryocrescens NCTC12993GCA_900706835contigncbi580

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes86.82no
gram-positiveno97.712no
anaerobicno97.334yes
aerobicyes90.572yes
halophileno92.734no
spore-formingno92.329no
thermophileno99.441yes
glucose-utilyes91.791no
flagellatedno57.156no
glucose-fermentyes91.563no

External links

@ref: 1783

culture collection no.: DSM 4588, ATCC 33435, CDC 2065-78, CIP 82.96, GIFU 10604, IAM 14204, CCUG 18767, CECT 862, JCM 7580, BCRC 14813, LMG 7859, NBRC 102467, NCTC 12993

straininfo link

  • @ref: 74472
  • straininfo: 3184

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1783Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4588)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4588
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37929Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11372
46883Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 18767)https://www.ccug.se/strain?id=18767
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68374Automatically annotated from API ID32E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74472Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3184.1StrainInfo: A central database for resolving microbial strain identifiers
118799Curators of the CIPCollection of Institut Pasteur (CIP 82.96)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.96