Strain identifier
BacDive ID: 476
Type strain: 
Species: Marinobacter sp.
Strain Designation: CAB
Strain history: <- M. Gilewicz; CAB
NCBI tax ID(s): 2735889 (species)
version 9.1 (current version)
General
@ref: 4520
BacDive-ID: 476
DSM-Number: 11874
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Marinobacter sp. CAB is a Gram-negative bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 2735889
- Matching level: species
strain history
- @ref: 4520
- history: <- M. Gilewicz; CAB
doi: 10.13145/bacdive476.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter sp.
- full scientific name: Marinobacter Gauthier et al. 1992
@ref: 4520
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter sp.
full scientific name: Marinobacter sp.
strain designation: CAB
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 98 | |
| 69480 | 91.592 | yes |
Culture and growth conditions
culture medium
- @ref: 4520
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 4520
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
compound production
| @ref | compound |
|---|---|
| 4520 | wax esters |
| 4520 | isoprenoids |
Isolation, sampling and environmental information
isolation
- @ref: 4520
- sample type: marine sediment
- geographic location: Gulf of Fos, Lavera
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_1186.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_693;97_808;98_936;99_1186&stattab=map
- Last taxonomy: Marinobacter hydrocarbonoclasticus subclade
- 16S sequence: U61848
- Sequence Identity:
- Total samples: 2085
- soil counts: 146
- aquatic counts: 1788
- animal counts: 115
- plant counts: 36
Sequence information
16S sequences
- @ref: 4520
- description: Marinobacter sp. CAB 16S ribosomal RNA gene sequence
- accession: U61848
- length: 1534
- database: nuccore
- NCBI tax ID: 49119
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinobacter sp. DSM 11874 | 2735889.3 | wgs | patric | 2735889 |
| 66792 | Marinobacter sp. DSM 11874 | 2861234187 | draft | img | 2735889 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.12 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.642 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 86.181 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 91.592 | no |
External links
@ref: 4520
culture collection no.: DSM 11874
straininfo link
- @ref: 70155
- straininfo: 113446
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4520 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11874) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11874 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 70155 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113446.1 | StrainInfo: A central database for resolving microbial strain identifiers |