Strain identifier

BacDive ID: 449

Type strain: Yes

Species: Alteromonas stellipolaris

Strain Designation: R10SW13

Strain history: CIP <- 2005, KCTC <- E.P. Ivanova, Swinburne Univ., Victoria, Australia: strain R10SW13

NCBI tax ID(s): 233316 (species)

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General

@ref: 5806

BacDive-ID: 449

DSM-Number: 15446

keywords: genome sequence, 16S sequence, Bacteria, aerobe, chemoorganotroph, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Alteromonas stellipolaris R10SW13 is an aerobe, chemoorganotroph, mesophilic bacterium that forms circular colonies and was isolated from sea water.

NCBI tax id

  • NCBI tax id: 233316
  • Matching level: species

strain history

@refhistory
5806<- E. P. Ivanova, Swinburne Univ. Technol., IRIS, Hawthorn, Australia; R10SW13
116035CIP <- 2005, KCTC <- E.P. Ivanova, Swinburne Univ., Victoria, Australia: strain R10SW13

doi: 10.13145/bacdive449.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Alteromonas
  • species: Alteromonas stellipolaris
  • full scientific name: Alteromonas stellipolaris Van Trappen et al. 2004

  • synonyms

    • @ref: 20215
    • synonym: Alteromonas addita

@ref: 5806

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Alteromonas

species: Alteromonas addita

full scientific name: Alteromonas addita Ivanova et al. 2005

strain designation: R10SW13

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotilityflagellum arrangement
23289negative0.7-0.9 µmrod-shapedyesmonotrichous, polar
116035negativerod-shapedno

colony morphology

  • @ref: 23289
  • type of hemolysis: alpha/beta
  • hemolysis ability: 1
  • colony size: 2-3 mm
  • colony shape: circular
  • medium used: Marine agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5806BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23289Marine agar (MA)yes
37450Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116035CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5806positivegrowth25mesophilic
23289positivegrowth4-37
23289nogrowth40thermophilic
37450positivegrowth30mesophilic
116035positivegrowth5-30
116035nogrowth37mesophilic
116035nogrowth41thermophilic

culture pH

@refabilitytypepHPH range
23289positivegrowth6.0-10.0alkaliphile
23289positiveoptimum7.5-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 23289
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 23289
  • type: chemoorganotroph

spore formation

  • @ref: 23289
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
23289NaClnogrowth0 %
23289NaClpositivegrowth1-10 %
23289NaClnogrowth15 %
116035NaClpositivegrowth0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2328916899D-mannitol-assimilation
2328924996lactate+assimilation
23289167632-oxobutanoate+carbon source
23289309162-oxoglutarate+carbon source
23289286442-oxopentanoate+carbon source
23289181014-hydroxyphenylacetic acid+carbon source
2328930089acetate+carbon source
2328915963ribitol+carbon source
23289645522-hydroxybutyrate+carbon source
232898295beta-hydroxybutyrate+carbon source
2328916383cis-aconitate+carbon source
2328918333D-arabitol+carbon source
2328917057cellobiose+carbon source
2328915824D-fructose+carbon source
2328912931D-galactonate+carbon source
2328918024D-galacturonic acid+carbon source
2328917784D-glucosaminic acid+carbon source
2328915748D-glucuronate+carbon source
2328917716lactose+carbon source
2328916024D-mannose+carbon source
2328928053melibiose+carbon source
2328927605D-psicose+carbon source
2328916634raffinose+carbon source
2328917924D-sorbitol+carbon source
2328916551D-trehalose+carbon source
2328923652dextrin+carbon source
2328924996lactate+carbon source
2328917113erythritol+carbon source
2328915740formate+carbon source
23289167244-hydroxybutyrate+carbon source
2328928087glycogen+carbon source
2328917240itaconate+carbon source
2328930849L-arabinose+carbon source
2328918287L-fucose+carbon source
2328962345L-rhamnose+carbon source
2328925000lactone+carbon source
232896359lactulose+carbon source
2328915792malonate+carbon source
2328917306maltose+carbon source
23289320055methyl beta-D-glucopyranoside+carbon source
2328917268myo-inositol+carbon source
23289506227N-acetylglucosamine+carbon source
2328917272propionate+carbon source
2328917992sucrose+carbon source
2328932528turanose+carbon source
2328953426tween 80+carbon source
2328917151xylitol+carbon source
2328928017starch+hydrolysis
232892509agar+/-hydrolysis
232895291gelatin+/-hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin+builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
1160354853esculin-hydrolysis
11603517632nitrate-reduction
11603516301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2328953388polyhydroxybutyrateno
11603535581indoleno

enzymes

@refvalueactivityec
23289arginine dihydrolase-3.5.3.6
23289lysine decarboxylase-4.1.1.18
23289ornithine decarboxylase-4.1.1.17
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116035oxidase+
116035beta-galactosidase+3.2.1.23
116035alcohol dehydrogenase-1.1.1.1
116035gelatinase+
116035amylase+
116035caseinase+3.4.21.50
116035catalase+1.11.1.6
116035tween esterase+
116035lecithinase-
116035lipase+
116035lysine decarboxylase-4.1.1.18
116035ornithine decarboxylase-4.1.1.17
116035protease+
116035tryptophan deaminase-
116035urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116035-+++-++---++++-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116035----++---+++-----+----+-+++++++---+/-++-++---------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116035+++++-++-+++++-+++++-++--------+-+++-----+-------------+-+--+-++-+----------------------++++-++-+--

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
23289sea water2000Chazhma Bay in Pacific OceanRussiaRUSAsia
5806sea waterPacific Ocean, Sea of Japan, Chazhma Bay
116035Environment, Sea water samplesChazhma baySea of Japan

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_700.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_261;97_285;98_318;99_700&stattab=map
  • Last taxonomy: Alteromonas
  • 16S sequence: AY682202
  • Sequence Identity:
  • Total samples: 655
  • aquatic counts: 653
  • animal counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
58061Risk group (German classification)
1160351Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5806
  • description: Alteromonas addita 16S ribosomal RNA gene, partial sequence
  • accession: AY682202
  • length: 1466
  • database: ena
  • NCBI tax ID: 287094

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alteromonas addita R10SW132687453643completeimg287094
66792Alteromonas stellipolaris R10SW13GCA_001562195completencbi233316

GC content

@refGC-contentmethod
580643.0
2328943.00thermal denaturation, midpoint method (Tm)

External links

@ref: 5806

culture collection no.: DSM 15446, KCTC 12195, KMM 3600, LMG 22532, CIP 108794

straininfo link

  • @ref: 70128
  • straininfo: 131999

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15879234Alteromonas addita sp. nov.Ivanova EP, Bowman JP, Lysenko AM, Zhukova NV, Gorshkova NM, Sergeev AF, Mikhailov VVInt J Syst Evol Microbiol10.1099/ijs.0.63521-02005Agar/metabolism, Alteromonas/*classification/cytology/*isolation & purification, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gelatin/metabolism, Genes, rRNA, Gentian Violet, Growth Inhibitors/pharmacology, Hemolysis, Hydrogen-Ion Concentration, Japan, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Pacific Ocean, Phenazines, Phospholipids/analysis, Phylogeny, Pigments, Biological, Polysorbates/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/pharmacology, Temperature, Water MicrobiologyMetabolism
Enzymology19584557Molecular cloning and functional expression of a new amylosucrase from Alteromonas macleodii.Ha SJ, Seo DH, Jung JH, Cha J, Kim TJ, Kim YW, Park CSBiosci Biotechnol Biochem10.1271/bbb.808912009Alteromonas/*enzymology, Amino Acid Sequence, Cloning, Molecular, Enzyme Stability, Escherichia coli/genetics, Gene Expression, Glucosyltransferases/biosynthesis/chemistry/*genetics/*metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, Polymers/metabolism, Recombinant Proteins/biosynthesis/chemistry/genetics/metabolism, Sequence Alignment, Sequence Homology, Nucleic Acid, TemperatureMetabolism
Phylogeny23221523Isolation and characterization of an agarase-producing bacterial strain, Alteromonas sp. GNUM-1, from the West Sea, Korea.Kim J, Hong SKJ Microbiol Biotechnol10.4014/jmb.1209.080872012Agar/metabolism, Alteromonas/chemistry/*enzymology/genetics/*isolation & purification, Cell Count, Culture Media, Glycoside Hydrolases/*biosynthesis/genetics/isolation & purification/metabolism, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Phenotype, Phylogeny, Sargassum/microbiology, Sodium Chloride, Water MicrobiologyEnzymology
Phylogeny30362935Salinimonas sediminis sp. nov., a piezophilic bacterium isolated from a deep-sea sediment sample from the New Britain Trench.Cao J, Lai Q, Liu P, Wei Y, Wang L, Liu R, Fang JInt J Syst Evol Microbiol10.1099/ijsem.0.0030552018Alteromonadaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cold Temperature, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Geologic Sediments/*microbiology, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5806Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15446)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15446
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23289Elena P. Ivanova, John P. Bowman, Anatoly M. Lysenko, Natalia V. Zhukova, Nataliya M. Gorshkova, Alexander F. Sergeev, Valery V. Mikhailov10.1099/ijs.0.63521-0Alteromonas addita sp. nov.IJSEM 55: 1065-1068 200515879234
37450Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6463
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70128Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID131999.1StrainInfo: A central database for resolving microbial strain identifiers
116035Curators of the CIPCollection of Institut Pasteur (CIP 108794)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108794