Strain identifier

BacDive ID: 4388

Type strain: Yes

Species: Erwinia mallotivora

Strain Designation: AM1, AM-1

Strain history: CIP <- 1997, CFBP <- M. Goto: strain AM-1

NCBI tax ID(s): 69222 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 1773

BacDive-ID: 4388

DSM-Number: 4565

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped, plant pathogen

description: Erwinia mallotivora AM1 is a facultative anaerobe, mesophilic, Gram-negative plant pathogen that was isolated from Mallotus japonicus.

NCBI tax id

  • NCBI tax id: 69222
  • Matching level: species

strain history

@refhistory
1773<- ATCC <- M. Goto, AM1 <- NCPPB <- PDDCC
120759CIP <- 1997, CFBP <- M. Goto: strain AM-1

doi: 10.13145/bacdive4388.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Erwinia
  • species: Erwinia mallotivora
  • full scientific name: Erwinia mallotivora Goto 1976 (Approved Lists 1980)

@ref: 1773

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Erwinia

species: Erwinia mallotivora

full scientific name: Erwinia mallotivora Goto 1976 emend. Hauben et al. 1998

strain designation: AM1, AM-1

type strain: yes

Morphology

cell morphology

  • @ref: 120759
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1773NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39226MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
120759CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1773positivegrowth26mesophilic
39226positivegrowth25mesophilic
120759positivegrowth10-30
120759nogrowth5psychrophilic
120759nogrowth37mesophilic
120759nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120759
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120759mannitol+fermentation29864
120759citrate-carbon source16947
120759glucose+fermentation17234
120759lactose+fermentation17716
120759nitrate-reduction17632
120759nitrite-reduction16301
120759malonate-assimilation15792
120759sodium thiosulfate-builds gas from132112
120759glucose+degradation17234

antibiotic resistance

  • @ref: 120759
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120759
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12075915688acetoin-
12075917234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
120759oxidase-
120759beta-galactosidase+3.2.1.23
120759alcohol dehydrogenase-1.1.1.1
120759gelatinase-
120759catalase+1.11.1.6
120759lysine decarboxylase-4.1.1.18
120759ornithine decarboxylase-4.1.1.17
120759phenylalanine ammonia-lyase-4.3.1.24
120759tryptophan deaminase-
120759urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120759-+---+----++-+---+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120759--------+/-----------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120759+++++--+---------+-+-+---------+-+---------+-----+---------++------------------++-----+------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentisolation date
1773Mallotus japonicusMallotus japonicus
120759Mallotus japonicusJapanJPNAsia1975

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Tree

Safety information

risk assessment

@refpathogenicity plantbiosafety levelbiosafety level comment
1773yes1Risk group (German classification)
1207591Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Erwinia mallotivora gene for 16S ribosomal RNA, partial sequence, strain: ATCC29573AB2429091110ena69222
20218Erwinia mallotivora 16S rRNA gene (strain DSM 4565)AJ2334141504ena69222
20218Erwinia mallotivora LMG 2708 16S ribosomal RNAZ960841484ena69222

External links

@ref: 1773

culture collection no.: DSM 4565, ATCC 29573, NCPPB 2851, PDDCC 5705, CIP 105197, CFBP 2503

straininfo link

  • @ref: 73879
  • straininfo: 125682

literature

  • topic: Phylogeny
  • Pubmed-ID: 21339975
  • title: Erwinia mallotivora sp., a new pathogen of papaya (Carica papaya) in Peninsular Malaysia.
  • authors: Amin NM, Bunawan H, Redzuan RA, Jaganath IB
  • journal: Int J Mol Sci
  • DOI: 10.3390/ijms12010039
  • year: 2010
  • mesh: Carica/*microbiology, Erwinia/genetics/*isolation & purification, Malaysia, Phylogeny, Plant Diseases/*microbiology, RNA, Ribosomal, 16S/genetics
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1773Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4565)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4565
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39226Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17190
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
73879Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID125682.1StrainInfo: A central database for resolving microbial strain identifiers
120759Curators of the CIPCollection of Institut Pasteur (CIP 105197)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105197