Strain identifier

BacDive ID: 4383

Type strain: Yes

Species: Kosakonia arachidis

Strain Designation: Ah-143

Strain history: CIP <- 2014, DSMZ <- KCTC <- M. Madhaiyan et al., Tamil Nadu Agric. Univ., Coimbatore, India: strain Ah-143

NCBI tax ID(s): 551989 (species)

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General

@ref: 17926

BacDive-ID: 4383

DSM-Number: 25165

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Kosakonia arachidis Ah-143 is an aerobe, Gram-negative, motile bacterium that was isolated from rhizosphere soil of groundnut from experimental plots.

NCBI tax id

  • NCBI tax id: 551989
  • Matching level: species

strain history

@refhistory
17926<- KCTC <- M. Madhaiyan et al., Dept. Agricultural Microbiology, Tamil Nadu Agric. Univ., Coimbatore, India
67771<- M Madhaiyan, Tamilnadu Agri. Univ., India
116468CIP <- 2014, DSMZ <- KCTC <- M. Madhaiyan et al., Tamil Nadu Agric. Univ., Coimbatore, India: strain Ah-143

doi: 10.13145/bacdive4383.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Kosakonia
  • species: Kosakonia arachidis
  • full scientific name: Kosakonia arachidis (Madhaiyan et al. 2010) Brady et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Enterobacter arachidis

@ref: 17926

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Kosakonia

species: Kosakonia arachidis

full scientific name: Kosakonia arachidis (Madhaiyan et al. 2010) Brady et al. 2013

strain designation: Ah-143

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29467negative2-3.7 µm0.5-0.7 µmrod-shapedyes
67771negative
116468negativerod-shapedyes
69480negative100

pigmentation

  • @ref: 29467
  • production: no

multimedia

  • @ref: 17926
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25165.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41604MEDIUM 328- for nutrient agaryesDistilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
116468CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328
116468CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

@refgrowthtypetemperature
29467positivegrowth20-30
29467positiveoptimum28
41604positivegrowth30
63346positivegrowth30
67771positivegrowth28

culture pH

@refabilitytypepHPH range
29467positivegrowth04-10alkaliphile
29467positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29467aerobe
63346aerobe
67771aerobe

spore formation

@refspore formationconfidence
29467no
69480no90.504

compound production

@refcompound
17926indole-3-acetic acid
179261 aminocyclopropane-1-carboxylate deaminase
17926nitrogenase

halophily

@refsaltgrowthtested relationconcentration
29467NaClpositivegrowth0-5 %
29467NaClpositiveoptimum0-5 %

observation

  • @ref: 29467
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2946718403L-arabitol+carbon source
2946716947citrate+carbon source
2946733984fucose+carbon source
2946726546rhamnose+carbon source
2946730911sorbitol+carbon source
2946730031succinate+carbon source
2946717992sucrose+carbon source
2946717632nitrate+reduction
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid+builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate+assimilation
6837427897tryptophan-energy source
6837417634D-glucose+builds acid from
6837417992sucrose+builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose+builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose+builds acid from
6837430911sorbitol+builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
29467catalase+1.11.1.6
29467cytochrome oxidase+1.9.3.1
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase+3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
63346-----+---+++---+-+++++---++-++--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
17926rhizosphere soil of groundnut (Arachis hypogaea) from experimental plotsArachis hypogaeaTamilnadu UniversityIndiaINDAsia
63346Peanut root (Arachis hypogaea)IndiaINDAsia
67771From groundnut root (`Arachis hypogaea` L)IndiaINDAsia
116468Environment, Rhizosphere soil of groundnut, Arachis hypogaea, from experimental plotsTamilnaduIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
179261Risk group (German classification)
1164681Risk group (French classification)

Sequence information

16S sequences

  • @ref: 17926
  • description: Enterobacter arachidis strain Ah-143 16S ribosomal RNA gene, partial sequence
  • accession: EU672801
  • length: 1426
  • database: nuccore
  • NCBI tax ID: 551989

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kosakonia arachidis Ah-143GCA_900116535scaffoldncbi551989
66792Kosakonia arachidis Ah-1432651870175draftimg551989

GC content

  • @ref: 29467
  • GC-content: 53.2

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno100yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.704yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no73.383no
69480spore-formingspore-formingAbility to form endo- or exosporesno90.504yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno99.5no
69480flagellatedmotile2+Ability to perform flagellated movementyes74.94no

External links

@ref: 17926

culture collection no.: DSM 25165, KCTC 22375, LMG 26131, NCIMB 14469, CCUG 66539, CIP 110809

straininfo link

  • @ref: 73874
  • straininfo: 370181

literature

  • topic: Phylogeny
  • Pubmed-ID: 19684326
  • title: Enterobacter arachidis sp. nov., a plant-growth-promoting diazotrophic bacterium isolated from rhizosphere soil of groundnut.
  • authors: Madhaiyan M, Poonguzhali S, Lee JS, Saravanan VS, Lee KC, Santhanakrishnan P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.013664-0
  • year: 2009
  • mesh: Arachis/*microbiology, Base Composition, Base Sequence, Enterobacter/*classification/genetics/isolation & purification/physiology, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
17926Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25165)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25165
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29467Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2587028776041
41604Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30622
63346Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 66539)https://www.ccug.se/strain?id=66539
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68374Automatically annotated from API ID32E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
73874Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370181.1StrainInfo: A central database for resolving microbial strain identifiers
116468Curators of the CIPCollection of Institut Pasteur (CIP 110809)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110809