Strain identifier

BacDive ID: 4374

Type strain: Yes

Species: Enterobacter asburiae

Strain history: CIP <- 1989, NCTC <- ATCC <- A.C. Mc Worther-Murlin, CDC: strain 1497-78, Enteric group 17

NCBI tax ID(s): 1298604 (strain), 61645 (species)

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General

@ref: 7028

BacDive-ID: 4374

DSM-Number: 17506

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Enterobacter asburiae DSM 17506 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from lochia exsudate.

NCBI tax id

NCBI tax idMatching level
61645species
1298604strain

strain history

@refhistory
7028<- CIP <- NCTC <- ATCC <- A.C. McWorther-Murlin
67770ATCC 35953 <-- CDC 1497-78.
116521CIP <- 1989, NCTC <- ATCC <- A.C. Mc Worther-Murlin, CDC: strain 1497-78, Enteric group 17

doi: 10.13145/bacdive4374.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter asburiae
  • full scientific name: Enterobacter asburiae Brenner et al. 1988

  • synonyms

    • @ref: 20215
    • synonym: Enterobacter muelleri

@ref: 7028

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter asburiae

full scientific name: Enterobacter asburiae Brenner et al. 1988 emend. Hoffmann et al. 2005

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes95.085
6948099.947negative
116521negativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7028TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
34916MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116521CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
116521CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
7028positivegrowth30mesophilic
34916positivegrowth30mesophilic
67770positivegrowth37mesophilic
116521positivegrowth10-41
116521nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116521
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.953

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
11652129864mannitol+fermentation
11652116947citrate+carbon source
11652117234glucose+fermentation
11652117716lactose-fermentation
11652117632nitrate+reduction
11652116301nitrite+reduction
11652115792malonate-assimilation
116521132112sodium thiosulfate-builds gas from

antibiotic resistance

  • @ref: 116521
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836835581indoleno
6836816136hydrogen sulfideno
11652135581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836835581indole-
11652115688acetoin+
11652117234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
116521oxidase-
116521beta-galactosidase+3.2.1.23
116521alcohol dehydrogenase+1.1.1.1
116521gelatinase-
116521catalase+1.11.1.6
116521lysine decarboxylase-4.1.1.18
116521ornithine decarboxylase+4.1.1.17
116521phenylalanine ammonia-lyase-4.3.1.24
116521tryptophan deaminase-
116521urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116521-+++-+----++-+-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7028+--++----+-++-+-+-++-
7028+--++------++-+-+-++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116521+++++--+-+++-+-+-++++++--------++++++--+-+--+---++++-++++--++-----------+--+---++-------+++++++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7028lochia exsudateRhode IslandUSAUSANorth America
67770Lochia exudate
116521Human, LochiaRhode IslandUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids
#Host Body Product#Urogenital tract#Vaginal secretion

taxonmaps

  • @ref: 69479
  • File name: preview.99_120.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_120&stattab=map
  • Last taxonomy: Enterobacteriaceae
  • 16S sequence: KF516258
  • Sequence Identity:
  • Total samples: 13334
  • soil counts: 615
  • aquatic counts: 1353
  • animal counts: 10132
  • plant counts: 1234

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
70281Risk group (German classification)
1165212Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Enterobacter asburiae partial 16S rRNA gene, strain ATCC 35953AJ417483420ena61645
20218Enterobacter asburiae strain DSMZ 17506 16S ribosomal RNA gene, partial sequenceKF5162581347ena61645
7028Enterobacter asburiae gene for 16S ribosomal RNA, partial sequenceAB0047441422ena61645

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterobacter asburiae ATCC 35953GCA_001521715completencbi61645
66792Enterobacter asburiae JCM 60511298604.3wgspatric1298604
66792Enterobacter asburiae strain ATCC 3595361645.134plasmidpatric61645
66792Enterobacter asburiae strain ATCC 3595361645.136plasmidpatric61645
66792Enterobacter asburiae strain ATCC 3595361645.86completepatric61645
66792Enterobacter asburiae strain ATCC 3595361645.135plasmidpatric61645
66792Enterobacter asburiae strain ATCC 3595361645.133plasmidpatric61645
66792Enterobacter asburiae strain FDAARGOS_89261645.358completepatric61645
66792Enterobacter asburiae strain NCTC1212361645.169wgspatric61645
66792Enterobacter asburiae JCM 60512734481909draftimg1298604
67770Enterobacter asburiae JCM 6051GCA_001312605contigncbi1298604
67770Enterobacter asburiae NCTC12123GCA_900447185contigncbi61645

GC content

@refGC-contentmethod
702855
6777053.9-56.1thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
flagellatedno66.397no
gram-positiveno98.159no
anaerobicno96.729no
aerobicyes75.218no
halophileno89.382no
spore-formingno94.449no
glucose-utilyes96.155no
motileyes83.731no
thermophileno99.559yes
glucose-fermentyes93.187yes

External links

@ref: 7028

culture collection no.: DSM 17506, ATCC 35953, CCUG 25714, CDC 1497-78, CIP 103358, JCM 6051, NCTC 12123, CCUG 25588, HUT 8116, KCTC 23920, NBRC 109912, CCM 8619

straininfo link

  • @ref: 73865
  • straininfo: 45070

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny3711302Enterobacter asburiae sp. nov., a new species found in clinical specimens, and reassignment of Erwinia dissolvens and Erwinia nimipressuralis to the genus Enterobacter as Enterobacter dissolvens comb. nov. and Enterobacter nimipressuralis comb. nov.Brenner DJ, McWhorter AC, Kai A, Steigerwalt AG, Farmer JJ 3rdJ Clin Microbiol10.1128/jcm.23.6.1114-1120.19861986Adult, Aged, Anti-Bacterial Agents/pharmacology, Base Composition, Child, Child, Preschool, Cytosine/analysis, DNA, Bacterial/analysis, Enterobacter/*classification/genetics/isolation & purification/physiology, Enterobacteriaceae/*classification, Enterobacteriaceae Infections/*microbiology, Erwinia/*classification, Female, Guanine/analysis, Humans, Infant, Male, Middle Aged, Nucleic Acid Hybridization, Sepsis/microbiology, Terminology as TopicPathogenicity
Phylogeny14687210Isolation of endophytic diazotroph Pantoea agglomerans and nondiazotroph Enterobacter asburiae from sweetpotato stem in Japan.Asis CA Jr, Adachi KLett Appl Microbiol10.1046/j.1472-765x.2003.01434.x2004Bacterial Typing Techniques, DNA, Ribosomal/chemistry/isolation & purification, Enterobacter/classification/growth & development/*isolation & purification/metabolism, Ipomoea batatas/*microbiology, Japan, Molecular Sequence Data, Nitrogen Fixation, Oxidation-Reduction, Pantoea/classification/growth & development/*isolation & purification/metabolism, Phenotype, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, SymbiosisEnzymology
Phylogeny24824638Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.Gu CT, Li CY, Yang LJ, Huo GCInt J Syst Evol Microbiol10.1099/ijs.0.064709-02014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacter/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNABiotechnology
Genetics28082144High-quality genome sequence of human pathogen Enterobacter asburiae type strain 1497-78(T).Zhu B, Wang S, Li O, Hussain A, Hussain A, Shen J, Ibrahim MJ Glob Antimicrob Resist10.1016/j.jgar.2016.12.0032017Cross Infection/microbiology, Enterobacter/*genetics/isolation & purification, Enterobacteriaceae Infections/microbiology, *Genome, Bacterial, Humans, *Sequence Analysis, DNAPathogenicity
29472760Genetic Diversity and Functional Analysis of Sigma Factors in Enterobacter cloacae Complex Resourced From Various Niche.Nazir F, Ibrahim M, Zaman G, Hussain A, Yar AM, Bo ZEvol Bioinform Online10.1177/11769343187548782018
Phylogeny32846260Facilitating harmful algae removal in fresh water via joint effects of multi-species algicidal bacteria.He L, Lin Z, Wang Y, He X, Zhou J, Guan M, Zhou JJ Hazard Mater10.1016/j.jhazmat.2020.1236622020Chlorophyll A, Enterobacter, *Fresh Water, *Harmful Algal Bloom, Pseudomonas, RNA, Ribosomal, 16S/genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7028Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17506)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17506
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34916Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15147
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73865Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45070.1StrainInfo: A central database for resolving microbial strain identifiers
116521Curators of the CIPCollection of Institut Pasteur (CIP 103358)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103358