Strain identifier

BacDive ID: 4319

Type strain: Yes

Species: Buttiauxella warmboldiae

Strain Designation: EG 59-like NSW 326

Strain history: CIP <- 1999, P.A.D. Grimont, Inst. Pasteur, Paris, France <- E.H. Müller: strain NSW 326

NCBI tax ID(s): 1354256 (strain), 82993 (species)

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General

@ref: 3474

BacDive-ID: 4319

DSM-Number: 9404

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Buttiauxella warmboldiae EG 59-like NSW 326 is an aerobe, mesophilic, motile bacterium that was isolated from snail.

NCBI tax id

NCBI tax idMatching level
82993species
1354256strain

strain history

@refhistory
3474<- H. E. Müller; EG 59-like NSW 326
123906CIP <- 1999, P.A.D. Grimont, Inst. Pasteur, Paris, France <- E.H. Müller: strain NSW 326

doi: 10.13145/bacdive4319.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Buttiauxella
  • species: Buttiauxella warmboldiae
  • full scientific name: Buttiauxella warmboldiae Müller et al. 1996

@ref: 3474

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Buttiauxella

species: Buttiauxella warmboldiae

full scientific name: Buttiauxella warmboldiae Müller et al. 1996

strain designation: EG 59-like NSW 326

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.832
6948099.986negative
123906yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3474TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
3474CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
38620MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123906CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
3474positivegrowth28mesophilic
38620positivegrowth30mesophilic
52782positivegrowth30mesophilic
123906positivegrowth5-37
123906nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
52782aerobe
123906facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.44

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose+builds acid from17108
68371erythritol-builds acid from17113
123906mannitol+fermentation29864
123906citrate-carbon source16947
123906glucose+fermentation17234
123906lactose-fermentation17716
123906nitrate+reduction17632
123906nitrite-reduction16301
123906malonate+assimilation15792
123906sodium thiosulfate-builds gas from132112
123906glucose+degradation17234

antibiotic resistance

  • @ref: 123906
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 123906
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12390615688acetoin-
12390617234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
123906oxidase-
123906beta-galactosidase+3.2.1.23
123906alcohol dehydrogenase-1.1.1.1
123906gelatinase-
123906catalase+1.11.1.6
123906lysine decarboxylase-4.1.1.18
123906ornithine decarboxylase-4.1.1.17
123906phenylalanine ammonia-lyase-4.3.1.24
123906tryptophan deaminase-
123906urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123906-+-+-+----++-+-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123906+/--++++---++++-+-++---+-++++++/---+---+/---+----+--++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123906+++++----++--+-+++++++-++------+++--------+-----------+++--++-+++----------+------+---+--++++++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
3474snailSydneyAustraliaAUSAustralia and Oceania
123906Animal, SnailSydney, New South WalesAustraliaAUSAustralia and Oceania

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_2027.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_411;98_1588;99_2027&stattab=map
  • Last taxonomy: Buttiauxella
  • 16S sequence: HG970168
  • Sequence Identity:
  • Total samples: 7158
  • soil counts: 778
  • aquatic counts: 1274
  • animal counts: 4089
  • plant counts: 1017

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
34741Risk group (German classification)
1239061Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Buttiauxella warmboldiae 16S rRNA gene (strain DSM 9404)AJ2334061507ena82993
3474Buttiauxella warmboldiae partial 16S rRNA gene, type strain DSM 9404T, clone 1HG9701651534ena82993
3474Buttiauxella warmboldiae partial 16S rRNA gene, type strain DSM 9404T, clone 2HG9701661531ena82993
3474Buttiauxella warmboldiae partial 16S rRNA gene, type strain DSM 9404T, clone 3HG9701671532ena82993
3474Buttiauxella warmboldiae partial 16S rRNA gene, type strain DSM 9404T, clone 4HG9701681532ena82993

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Buttiauxella warmboldiae CCUG 35512GCA_003818135contigncbi82993
66792Buttiauxella warmboldiae strain CCUG 3551282993.3wgspatric82993
66792Buttiauxella warmboldiae CCUG 355122835230308draftimg82993

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.774no
flagellatedyes54.484no
gram-positiveno98.193no
anaerobicno96.014no
halophileno93.279no
spore-formingno93.148no
glucose-utilyes93.502no
aerobicyes86.281yes
thermophileno99.406yes
glucose-fermentyes92.973no

External links

@ref: 3474

culture collection no.: CCUG 35512, DSM 9404, ATCC 51608, CCM 4878, CIP 106359, CDC 9513-94, NSW 326

straininfo link

  • @ref: 73811
  • straininfo: 43079

literature

  • topic: Phylogeny
  • Pubmed-ID: 11534554
  • title: Emended description of Buttiauxella agrestis with recognition of six new species of Buttiauxella and two new species of Kluyvera: Buttiauxella ferragutiae sp. nov., Buttiauxella gaviniae sp. nov., Buttiauxella brennerae sp. nov., Buttiauxella izardii sp. nov., Buttiauxella noackiae sp. nov., Buttiauxella warmboldiae sp. nov., Kluyvera cochleae sp. nov., and Kluyvera georgiana sp. nov.
  • authors: Muller HE, Brenner DJ, Fanning GR, Grimont PA, Kampfer P
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-46-1-50
  • year: 1996
  • mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification/metabolism, Humans, Intestines/microbiology, Mollusca/*microbiology, Nucleic Acid Hybridization, Phenotype, Snails/*microbiology, Soil Microbiology, Terminology as Topic, Water Microbiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3474Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9404)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9404
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38620Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18481
52782Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35512)https://www.ccug.se/strain?id=35512
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73811Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43079.1StrainInfo: A central database for resolving microbial strain identifiers
123906Curators of the CIPCollection of Institut Pasteur (CIP 106359)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106359