Strain identifier
BacDive ID: 4302
Type strain: 
Species: Ectothiorhodosinus mongolicus
Strain Designation: M9
Strain history: <- I. A. Bryantseva and V. M. Gorlenko; M-9 <- E. E. Panteleeva and V. M. Gorlenko
NCBI tax ID(s): 233100 (species)
version 9.1 (current version)
General
@ref: 5949
BacDive-ID: 4302
DSM-Number: 15479
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Ectothiorhodosinus mongolicus M9 is a Gram-negative bacterium that was isolated from shoreline of soda lake.
NCBI tax id
- NCBI tax id: 233100
- Matching level: species
strain history
- @ref: 5949
- history: <- I. A. Bryantseva and V. M. Gorlenko; M-9 <- E. E. Panteleeva and V. M. Gorlenko
doi: 10.13145/bacdive4302.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Ectothiorhodospiraceae
- genus: Ectothiorhodosinus
- species: Ectothiorhodosinus mongolicus
- full scientific name: Ectothiorhodosinus mongolicus corrig. Gorlenko et al. 2007
synonyms
- @ref: 20215
- synonym: Ectothiorhodosinus mongolicum
@ref: 5949
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Ectothiorhodosinus
species: Ectothiorhodosinus mongolicus
full scientific name: Ectothiorhodosinus mongolicus Gorlenko et al. 2007
strain designation: M9
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.833
Culture and growth conditions
culture medium
- @ref: 5949
- name: ECTOTHIORHODOSYNUS MEDIUM (DSMZ Medium 1002)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1002
- composition: Name: ECTOTHIORHODOSYNUS MEDIUM (DSMZ Medium 1002) Composition: NaCl 20.0 g/l NaHCO3 5.0 g/l Na2CO3 5.0 g/l Sodium acetate 1.0 g/l KH2PO4 0.5 g/l NH4Cl 0.5 g/l Na2S2O3 x 5 H2O 0.5 g/l MgCl2 x 6 H2O 0.2 g/l Na2S x 9 H2O 0.1 g/l CaCl2 0.1 g/l Yeast extract 0.1 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Vitamin B12 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water
culture temp
- @ref: 5949
- growth: positive
- type: growth
- temperature: 25-35
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 95.96
Isolation, sampling and environmental information
isolation
- @ref: 5949
- sample type: shoreline of soda lake
- geographic location: southeastern Mongolia, Lake Dzun-Uldziit-Nur
- country: Mongolia
- origin.country: MNG
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Coast |
| #Condition | #Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_3805.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_56;96_1953;97_2349;98_2898;99_3805&stattab=map
- Last taxonomy: Ectothiorhodosinus mongolicus subclade
- 16S sequence: AY298904
- Sequence Identity:
- Total samples: 146
- aquatic counts: 140
- animal counts: 5
- plant counts: 1
Safety information
risk assessment
- @ref: 5949
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5949
- description: Ectothiorhodosinus mongolicus strain M9 16S ribosomal RNA gene, partial sequence
- accession: AY298904
- length: 1445
- database: nuccore
- NCBI tax ID: 233100
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ectothiorhodosinus mongolicus M9 | GCA_900156225 | contig | ncbi | 233100 |
| 66792 | Ectothiorhodosinus mongolicus M9 | 2681812864 | draft | img | 233100 |
| 66792 | Ectothiorhodosinus mongolicus DSM 15479 | GCA_022406875 | chromosome | ncbi | 233100 |
GC content
- @ref: 5949
- GC-content: 57.5
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.833 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 68.089 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 53.469 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 95.96 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.893 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 69.783 | no |
External links
@ref: 5949
culture collection no.: DSM 15479, UNIQEM U217
straininfo link
- @ref: 73794
- straininfo: 403782
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5949 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15479) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15479 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 73794 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403782.1 | StrainInfo: A central database for resolving microbial strain identifiers |