Strain identifier

BacDive ID: 4301

Type strain: Yes

Species: Aquisalimonas asiatica

Strain history: CIP <- 2007, CECT <- 2006, A. Ventosa, Sevilla Univ., Sevilla, Spain: strain CG12

NCBI tax ID(s): 406100 (species)

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General

@ref: 7395

BacDive-ID: 4301

DSM-Number: 18102

keywords: genome sequence, 16S sequence, Bacteria, facultative aerobe, Gram-negative, motile, rod-shaped

description: Aquisalimonas asiatica DSM 18102 is a facultative aerobe, Gram-negative, motile bacterium that was isolated from water samples from the alkaline, saline Lake Chagannor .

NCBI tax id

  • NCBI tax id: 406100
  • Matching level: species

strain history

@refhistory
7395<- A. Ventosa, Univ. Seville, Dept. Microbiol. Parasitol., Spain; CG12 <- I. J. Carrasco et al.
116524CIP <- 2007, CECT <- 2006, A. Ventosa, Sevilla Univ., Sevilla, Spain: strain CG12

doi: 10.13145/bacdive4301.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Ectothiorhodospiraceae
  • genus: Aquisalimonas
  • species: Aquisalimonas asiatica
  • full scientific name: Aquisalimonas asiatica Márquez et al. 2007

@ref: 7395

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Ectothiorhodospiraceae

genus: Aquisalimonas

species: Aquisalimonas asiatica

full scientific name: Aquisalimonas asiatica Márquez et al. 2007

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32072negative6 µm0.8 µmrod-shapedyes
116524negativerod-shapedyes
69480negative98.5

pigmentation

  • @ref: 32072
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7395AQUISALIMONAS MEDIUM (DSMZ Medium 1182)yeshttps://mediadive.dsmz.de/medium/1182Name: AQUISALIMONAS MEDIUM (DSMZ Medium 1182) Composition: NaCl 80.0 g/l Na2CO3 20.0 g/l Glucose 10.0 g/l Agar 10.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Distilled water
37821MEDIUM 328- for nutrient agaryesDistilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
116524CIP Medium 700yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=700
116524CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328

culture temp

@refgrowthtypetemperature
7395positivegrowth37
32072positivegrowth20-50
32072positiveoptimum37
37821positivegrowth37

culture pH

@refabilitytypepHPH range
32072positivegrowth6.0-10.8alkaliphile
32072positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 32072
  • oxygen tolerance: facultative aerobe

spore formation

@refspore formationconfidence
32072no
69480no90.644
69481no100

halophily

@refsaltgrowthtested relationconcentration
32072NaClpositivegrowth01-20 %
32072NaClpositiveoptimum8.5 %

observation

  • @ref: 32072
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3207230089acetate+carbon source
3207222599arabinose+carbon source
3207217057cellobiose+carbon source
3207216947citrate+carbon source
3207223652dextrin+carbon source
3207215740formate+carbon source
3207216865gamma-aminobutyric acid+carbon source
3207217234glucose+carbon source
3207232323glucuronamide+carbon source
3207229987glutamate+carbon source
3207217754glycerol+carbon source
3207228087glycogen+carbon source
3207224996lactate+carbon source
3207217306maltose+carbon source
3207226271proline+carbon source
3207217272propionate+carbon source
3207251850methyl pyruvate+carbon source
3207226546rhamnose+carbon source
3207230031succinate+carbon source
3207253423tween 40+carbon source
3207253426tween 80+carbon source
3207217632nitrate+reduction
11652417632nitrate+reduction
11652416301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
3207216136hydrogen sulfideyes
11652435581indoleno

enzymes

@refvalueactivityec
32072catalase+1.11.1.6
32072cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
116524oxidase+
116524catalase+1.11.1.6
116524urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116524--++-+-++------+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7395water samples from the alkaline, saline Lake Chagannor (43° 21' N 113° 08' E)Inner MongoliaChinaCHNAsia
116524Environment, Soda lakeChagannor lake, inner MongoliaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Alkaline
#Condition#Saline

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
73951Risk group (German classification)
1165241Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7395
  • description: Aquasalimonas asiatica 16S rRNA gene, type strain CG12T
  • accession: AM404263
  • length: 1468
  • database: nuccore
  • NCBI tax ID: 406100

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aquisalimonas asiatica CGMCC 1.6291GCA_900110585scaffoldncbi406100
66792Aquisalimonas asiatica strain CGMCC 1.6291406100.9wgspatric406100
66792Aquisalimonas asiatica CGMCC 1.62912617270766draftimg406100

GC content

  • @ref: 7395
  • GC-content: 63.6

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno98.5no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no89.948yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes77.336no
69480spore-formingspore-formingAbility to form endo- or exosporesno90.644no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno94.997yes
69480flagellatedmotile2+Ability to perform flagellated movementyes81.852no

External links

@ref: 7395

culture collection no.: DSM 18102, CCM 7368, CECT 7151, CGMCC 1.6291, CG 12, CIP 109713

straininfo link

  • @ref: 73793
  • straininfo: 308601

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17473272Aquisalimonas asiatica gen. nov., sp. nov., a moderately halophilic bacterium isolated from an alkaline, saline lake in Inner Mongolia, China.Marquez MC, Carrasco IJ, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.64916-02007Base Composition, China, Chromatography, Thin Layer, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Gammaproteobacteria/*classification/growth & development/*isolation & purification/physiology, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phospholipids/analysis/isolation & purification, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Salts/metabolism, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, TemperatureEnzymology
Phylogeny24699066Aquisalimonas halophila sp. nov., a moderately halophilic bacterium isolated from a hypersaline mine.Zhang YJ, Jia M, Ma YC, Lu KY, Tian F, Klenk HP, Zhou Y, Tang SKInt J Syst Evol Microbiol10.1099/ijs.0.059428-02014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, *Mining, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics
Phylogeny25667394Aquisalimonas lutea sp. nov., a moderately halophilic bacterium from a saltern.Infante-Dominguez C, Sanchez-Porro C, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.0001062015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Ectothiorhodospiraceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Spain, *Water MicrobiologyGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
7395Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18102)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18102
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32072Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2831928776041
37821Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7487
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73793Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID308601.1StrainInfo: A central database for resolving microbial strain identifiers
116524Curators of the CIPCollection of Institut Pasteur (CIP 109713)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109713