Strain identifier
BacDive ID: 4294
Type strain: 
Species: Thioalkalivibrio jannaschii
Strain history: D. Y. Sorokin ALM 2.
NCBI tax ID(s): 147267 (species)
version 9 (current version)
General
@ref: 5371
BacDive-ID: 4294
DSM-Number: 14478
keywords: 16S sequence, Bacteria
description: Thioalkalivibrio jannaschii DSM 14478 is a bacterium that was isolated from water.
NCBI tax id
- NCBI tax id: 147267
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5371 | <- D. Y. Sorokin; ALM2 |
| 67770 | D. Y. Sorokin ALM 2. |
doi: 10.13145/bacdive4294.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Ectothiorhodospiraceae
- genus: Thioalkalivibrio
- species: Thioalkalivibrio jannaschii
- full scientific name: Thioalkalivibrio jannaschii corrig. Sorokin et al. 2002
synonyms
- @ref: 20215
- synonym: Thialkalivibrio jannaschii
@ref: 5371
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Thioalkalivibrio
species: Thioalkalivibrio jannaschii
full scientific name: Thioalkalivibrio jannaschii Sorokin et al. 2002
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5371
- name: THIOALKALIVIBRIO JANNASCHI (DSMZ Medium 1272)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1272
- composition: Name: THIOALKALIVIBRIO JANNASCHI (DSMZ Medium 1272) Composition: NaCl 15.0 g/l NaHCO3 15.0 g/l K2HPO4 0.5 g/l Na2CO3 0.5 g/l MgCl2 x 6 H2O 0.2 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l Na2MoO4 x 2 H2O 6e-05 g/l MnCl2 x 4 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 5371 | positive | growth | 28 |
| 67770 | positive | growth | 30 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 5371 | water | California, Lake Mono | USA | USA | North America |
| 67770 | Oxygen-sulfide interface water layer of stratified alkaline and saline Mono Lake | CA | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
Safety information
risk assessment
- @ref: 5371
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5371
- description: Thioalkalivibrio jannaschii 16S ribosomal RNA gene, partial sequence
- accession: AF329083
- length: 1474
- database: nuccore
- NCBI tax ID: 147267
GC content
- @ref: 5371
- GC-content: 63.7
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 5371
culture collection no.: DSM 14478, ALM 2, JCM 11372
straininfo link
- @ref: 73786
- straininfo: 101022
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12054257 | Thioalkalimicrobium cyclicum sp. nov. and Thioalkalivibrio jannaschii sp. nov., novel species of haloalkaliphilic, obligately chemolithoautotrophic sulfur-oxidizing bacteria from hypersaline alkaline Mono Lake (California). | Sorokin DY, Gorlenko VM, Tourova TP, Tsapin AI, Nealson KH, Kuenen GJ | Int J Syst Evol Microbiol | 10.1099/00207713-52-3-913 | 2002 | California, Culture Media, DNA, Ribosomal/analysis, Fresh Water/*microbiology, Gammaproteobacteria/*classification/genetics/*physiology/ultrastructure, Hydrogen-Ion Concentration, Molecular Sequence Data, Oxidation-Reduction, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/*pharmacology, Sulfur/*metabolism | Cultivation |
| Stress | 31333619 | Transcriptomic Analysis of Two Thioalkalivibrio Species Under Arsenite Stress Revealed a Potential Candidate Gene for an Alternative Arsenite Oxidation Pathway. | Ahn AC, Cavalca L, Colombo M, Schuurmans JM, Sorokin DY, Muyzer G | Front Microbiol | 10.3389/fmicb.2019.01514 | 2019 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5371 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14478) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14478 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 73786 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID101022.1 | StrainInfo: A central database for resolving microbial strain identifiers |