Strain identifier
BacDive ID: 4293
Type strain: 
Species: Thioalkalivibrio sp.
Strain Designation: ALRh
Strain history: <- D. Y. Sorokin; ALRh
NCBI tax ID(s): 1266911 (species)
version 9.1 (current version)
General
@ref: 5081
BacDive-ID: 4293
DSM-Number: 13533
keywords: genome sequence, Bacteria, Gram-negative
description: Thioalkalivibrio sp. ALRh is a Gram-negative bacterium that was isolated from soda lake.
NCBI tax id
- NCBI tax id: 1266911
- Matching level: species
strain history
- @ref: 5081
- history: <- D. Y. Sorokin; ALRh
doi: 10.13145/bacdive4293.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Ectothiorhodospiraceae
- genus: Thioalkalivibrio
- species: Thioalkalivibrio sp.
- full scientific name: Thioalkalivibrio corrig. Sorokin et al. 2001
synonyms
- @ref: 20215
- synonym: Thialkalivibrio
@ref: 5081
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Thioalkalivibrio
species: Thioalkalivibrio sp.
full scientific name: Thioalkalivibrio sp.
strain designation: ALRh
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99
Culture and growth conditions
culture medium
- @ref: 5081
- name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)
- growth: yes
- link: https://mediadive.dsmz.de/medium/925
- composition: Name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925) Composition: Na2CO3 20.0 g/l NaHCO3 10.0 g/l NaCl 5.0 g/l K2HPO4 1.0 g/l MgCl2 x 6 H2O 0.2 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l Na2MoO4 x 2 H2O 6e-05 g/l MnCl2 x 4 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l Distilled water
culture temp
- @ref: 5081
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 90.127
Isolation, sampling and environmental information
isolation
- @ref: 5081
- sample type: soda lake
- country: Kenya
- origin.country: KEN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Condition | #Alkaline |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thioalkalivibrio sp. ALRh | GCA_000381425 | scaffold | ncbi | 1266911 |
| 66792 | Thioalkalivibrio sp. ALRh | 1266911.3 | wgs | patric | 1266911 |
| 66792 | Thioalkalivibrio sp. ALRh | 2521172674 | draft | img | 1266911 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 59.748 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 51.292 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.127 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.959 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 73.86 | no |
External links
@ref: 5081
culture collection no.: DSM 13533
straininfo link
- @ref: 73785
- straininfo: 113525
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5081 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13533) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13533 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 73785 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113525.1 | StrainInfo: A central database for resolving microbial strain identifiers |