Strain identifier

BacDive ID: 4256

Type strain: No

Species: Dietzia maris

Strain Designation: P4

Strain history: CIP <- 2006, L. Seldin, UFRJ Univ., Rio de Janeiro, Brazil: strain P4

NCBI tax ID(s): 37915 (species)

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General

@ref: 12226

BacDive-ID: 4256

DSM-Number: 44994

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-positive, rod-shaped, human pathogen

description: Dietzia maris P4 is an obligate aerobe, Gram-positive, rod-shaped human pathogen that was isolated from soil.

NCBI tax id

  • NCBI tax id: 37915
  • Matching level: species

strain history

@refhistory
12226<- L. Seldin <- F. Freitas; P4
367892006, L. Seldin, Rio de Janeiro, Brazil: strain P4
118288CIP <- 2006, L. Seldin, UFRJ Univ., Rio de Janeiro, Brazil: strain P4

doi: 10.13145/bacdive4256.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Dietziaceae
  • genus: Dietzia
  • species: Dietzia maris
  • full scientific name: Dietzia maris (Nesterenko et al. 1982 ex Harrison 1929) Rainey et al. 1995

  • synonyms

    @refsynonym
    20215Dietzia cinnamea
    20215Rhodococcus maris

@ref: 12226

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Dietziaceae

genus: Dietzia

species: Dietzia maris

full scientific name: Dietzia maris (Nesterenko et al. 1982) Rainey et al. 1995 emend. Nouioui et al. 2018

strain designation: P4

type strain: no

Morphology

cell morphology

  • @ref: 118288
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 118288

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12226GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
12226TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
36789MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118288CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
12226positivegrowth28
36789positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 118288
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11828817632nitrate+reduction
11828816301nitrite-reduction

metabolite production

  • @ref: 118288
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
118288oxidase-
118288alcohol dehydrogenase-1.1.1.1
118288catalase+1.11.1.6
118288lysine decarboxylase-4.1.1.18
118288ornithine decarboxylase-4.1.1.17
118288urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118288-+++++--+-++---+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
12226soilRio De JaneiroBrazilBRAMiddle and South America
118288Environment, SoilRio de JaneiroBrazilBRAMiddle and South America2002

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
12226yes, in single cases1Risk group (German classification)
1182881Risk group (French classification)

Sequence information

16S sequences

  • @ref: 12226
  • description: Dietzia cinnamea strain P4 16S ribosomal RNA gene, partial sequence
  • accession: DQ645811
  • length: 722
  • database: nuccore
  • NCBI tax ID: 910954

External links

@ref: 12226

culture collection no.: DSM 44994, CIP 109208

Reference

@idauthorscataloguedoi/urltitle
12226Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44994)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44994
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36789Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6924
68382Automatically annotated from API zym
118288Curators of the CIPCollection of Institut Pasteur (CIP 109208)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109208