Strain identifier

BacDive ID: 4102

Type strain: No

Species: Desulfovibrio sp.

Strain Designation: NY682

Strain history: <- P. S. Langendijk, University of Nijmegen, Netherlands; NY682 <- P. S. Langendijk {1997}

NCBI tax ID(s): 502282 (species)

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General

@ref: 4828

BacDive-ID: 4102

DSM-Number: 12803

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfovibrio sp. NY682 is an anaerobe, mesophilic bacterium that was isolated from human dental plaque.

NCBI tax id

  • NCBI tax id: 502282
  • Matching level: species

strain history

  • @ref: 4828
  • history: <- P. S. Langendijk, University of Nijmegen, Netherlands; NY682 <- P. S. Langendijk {1997}

doi: 10.13145/bacdive4102.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Desulfovibrio
  • species: Desulfovibrio sp.
  • full scientific name: Desulfovibrio Kluyver and van Niel 1936 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Alteridesulfovibrio
    20215Frigididesulfovibrio
    20215Desulfomonas
    20215Psychrodesulfovibrio
    20215Aminidesulfovibrio

@ref: 4828

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Desulfovibrio

species: Desulfovibrio sp.

full scientific name: Desulfovibrio sp.

strain designation: NY682

type strain: no

Culture and growth conditions

culture medium

  • @ref: 4828
  • name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/63
  • composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 4828
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4828
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4828
  • sample type: human dental plaque
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Plaque
#Host Body Product#Oral cavity and Airways#Dental plaque

taxonmaps

  • @ref: 69479
  • File name: preview.99_1664.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_139;96_949;97_1105;98_1316;99_1664&stattab=map
  • Last taxonomy: Desulfovibrio porci subclade
  • 16S sequence: AJ251630
  • Sequence Identity:
  • Total samples: 23922
  • soil counts: 178
  • aquatic counts: 673
  • animal counts: 22923
  • plant counts: 148

Sequence information

16S sequences

  • @ref: 4828
  • description: Desulfovibrio sp. DSM12803 16S rRNA gene
  • accession: AJ251630
  • length: 1502
  • database: ena
  • NCBI tax ID: 502282

GC content

  • @ref: 4828
  • GC-content: 61.1

External links

@ref: 4828

culture collection no.: DSM 12803

straininfo link

  • @ref: 73605
  • straininfo: 49364

literature

  • topic: Phylogeny
  • Pubmed-ID: 25007438
  • title: [Biodiversity of sulfate-reducing bacteria growing on objects of heating systems].
  • authors: Purish LM, Asaulenko LG, Abdulina DR, Iutinskaia GA
  • journal: Mikrobiol Z
  • year: 2014
  • mesh: Biodiversity, Clostridium/classification/genetics/*isolation & purification, DNA, Bacterial/classification/genetics/*isolation & purification, Deltaproteobacteria/classification/genetics/*isolation & purification, Desulfovibrio/classification/genetics/*isolation & purification, Equipment Contamination, Genes, rRNA, Heating, Hot Temperature, Humans, *Phylogeny, RNA, Ribosomal, 16S/classification/genetics/*isolation & purification, Sulfur-Reducing Bacteria/classification/genetics/*isolation & purification, Ukraine, Urbanization
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
4828Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12803)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12803
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73605Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49364.1StrainInfo: A central database for resolving microbial strain identifiers