Strain identifier
BacDive ID: 4074
Type strain: 
Species: Desulfovibrio desulfuricans
Strain Designation: El Agheila Z
Strain history: <- NCIB <- M.E. Adams and K.R. Butlin, strain El Agheila Z (D. aestuarii)
NCBI tax ID(s): 876 (species)
version 8.1 (current version)
General
@ref: 670
BacDive-ID: 4074
DSM-Number: 1926
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfovibrio desulfuricans El Agheila Z is an anaerobe, mesophilic bacterium that was isolated from sulphurous mud.
NCBI tax id
- NCBI tax id: 876
- Matching level: species
strain history
- @ref: 670
- history: <- NCIB <- M.E. Adams and K.R. Butlin, strain El Agheila Z (D. aestuarii)
doi: 10.13145/bacdive4074.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Desulfovibrio
- species: Desulfovibrio desulfuricans
- full scientific name: Desulfovibrio desulfuricans (Beijerinck 1895) Kluyver and van Niel 1936 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Spirillum desulfuricans
@ref: 670
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfovibrio
species: Desulfovibrio desulfuricans
full scientific name: Desulfovibrio desulfuricans (Beijerinck 1895) Kluyver and van Niel 1936
strain designation: El Agheila Z
type strain: no
Culture and growth conditions
culture medium
- @ref: 670
- name: HALODESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 163)
- growth: yes
- link: https://mediadive.dsmz.de/medium/163
- composition: Name: HALODESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 163) Composition: NaCl 25.0 g/l Na-DL-lactate 2.0 g/l MgSO4 x 7 H2O 2.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l NH4Cl 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Na-thioglycolate 0.1 g/l CaCl2 x 2 H2O 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.00049 g/l Distilled water
culture temp
- @ref: 670
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 670
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 670
- sample type: sulphurous mud
- geographic location: Ain-ez-Zania lake, near El Agheila
- country: Libya
- origin.country: LBY
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Condition | #Sulfuric |
Safety information
risk assessment
- @ref: 670
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Desulfovibrio desulfuricans subsp. desulfuricans strain El Agheila 16S ribosomal RNA gene, partial sequence
- accession: HQ693574
- length: 784
- database: ena
- NCBI tax ID: 115117
External links
@ref: 670
culture collection no.: DSM 1926, NCIMB 8380
straininfo link
- @ref: 73577
- straininfo: 47511
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 2361938 | Diversity and origin of Desulfovibrio species: phylogenetic definition of a family. | Devereux R, He SH, Doyle CL, Orkland S, Stahl DA, LeGall J, Whitman WB | J Bacteriol | 10.1128/jb.172.7.3609-3619.1990 | 1990 | Base Sequence, Biological Evolution, Culture Media, Desulfovibrio/classification/*genetics/growth & development, Molecular Sequence Data, Oligonucleotide Probes, *Phylogeny, RNA, Ribosomal/genetics, RNA, Ribosomal, 16S/genetics | Cultivation |
| Metabolism | 7574651 | Application of antisera raised against sulfate-reducing bacteria for indirect immunofluorescent detection of immunoreactive bacteria in sediment from the German Baltic Sea. | Lillebaek R | Appl Environ Microbiol | 10.1128/aem.61.9.3436-3442.1995 | 1995 | *Antibodies, Bacterial, Antibody Specificity, Antigens, Bacterial, Colony Count, Microbial, Desulfovibrio/immunology, Ecosystem, Epitopes, Fluorescent Antibody Technique, Indirect, Germany, Oxidation-Reduction, Seawater, Sulfates/metabolism, Sulfur-Reducing Bacteria/*immunology/isolation & purification/metabolism, *Water Microbiology | Enzymology |
| Metabolism | 16085855 | Cadmium accumulation and DNA homology with metal resistance genes in sulfate-reducing bacteria. | Naz N, Young HK, Ahmed N, Gadd GM | Appl Environ Microbiol | 10.1128/AEM.71.8.4610-4618.2005 | 2005 | Amino Acid Sequence, Bacterial Proteins/genetics/metabolism, Cadmium/*metabolism/*pharmacology, DNA-Binding Proteins/genetics, Deltaproteobacteria/*drug effects/genetics/metabolism, Desulfovibrio/drug effects/growth & development/metabolism, Drug Resistance, Bacterial/*genetics, Metallothionein/genetics, Metals, Heavy/metabolism/pharmacology, Molecular Sequence Data, Oxidation-Reduction, Repressor Proteins/genetics, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sulfur-Reducing Bacteria/*drug effects/genetics/metabolism | Pathogenicity |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 670 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1926) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1926 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 73577 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47511.1 | StrainInfo: A central database for resolving microbial strain identifiers |