Strain identifier
BacDive ID: 4058
Type strain: 
Species: Desulfomicrobium norvegicum
Strain history: <- H. Biebl and N. Pfennig <- J. LeGall <- J.R. Postgate, strain Norway 4 (Desulfovibrio desulfuricans)
NCBI tax ID(s): 52561 (species)
version 8.1 (current version)
General
@ref: 615
BacDive-ID: 4058
DSM-Number: 1741
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile
description: Desulfomicrobium norvegicum DSM 1741 is an anaerobe, mesophilic, motile bacterium that was isolated from Oslo Harbour water.
NCBI tax id
- NCBI tax id: 52561
- Matching level: species
strain history
- @ref: 615
- history: <- H. Biebl and N. Pfennig <- J. LeGall <- J.R. Postgate, strain Norway 4 (Desulfovibrio desulfuricans)
doi: 10.13145/bacdive4058.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfomicrobiaceae
- genus: Desulfomicrobium
- species: Desulfomicrobium norvegicum
- full scientific name: Desulfomicrobium norvegicum Genthner et al. 1997
@ref: 615
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfomicrobiaceae
genus: Desulfomicrobium
species: Desulfomicrobium norvegicum
full scientific name: Desulfomicrobium norvegicum Genthner et al. 1997
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.133 | |
| 69480 | 99.992 | negative |
Culture and growth conditions
culture medium
- @ref: 615
- name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)
- growth: yes
- link: https://mediadive.dsmz.de/medium/641
- composition: Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641) Composition: Na-DL-lactate 2.49252 g/l Na2SO4 1.99402 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l Na2S2O3 x 5 H2O 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 615
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 615 | anaerobe | |
| 69480 | anaerobe | 99.999 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.982 |
compound production
- @ref: 615
- compound: restriction endonuclease DdeI
Isolation, sampling and environmental information
isolation
- @ref: 615
- sample type: Oslo Harbour water
- country: Norway
- origin.country: NOR
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
taxonmaps
- @ref: 69479
- File name: preview.99_5694.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_533;96_2736;97_3363;98_4242;99_5694&stattab=map
- Last taxonomy: Desulfomicrobium
- 16S sequence: AJ277897
- Sequence Identity:
- Total samples: 2243
- soil counts: 172
- aquatic counts: 1917
- animal counts: 82
- plant counts: 72
Safety information
risk assessment
- @ref: 615
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Desulfomicrobium norvegicum strain DSM 1741 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ834676 | 523 | ena | 52561 |
| 615 | Desulfomicrobium norvegicum 16S rRNA gene, strain DSM 1741T | AJ277897 | 1517 | ena | 52561 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfomicrobium norvegicum DSM 1741 | GCA_900114595 | scaffold | ncbi | 52561 |
| 66792 | Desulfomicrobium norvegicum strain DSM 1741 | 52561.3 | wgs | patric | 52561 |
| 66792 | Desulfomicrobium norvegicum DSM 1741 | 2675903163 | draft | img | 52561 |
GC content
- @ref: 615
- GC-content: 55.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.357 | no |
| flagellated | no | 53.782 | no |
| gram-positive | no | 98.812 | no |
| anaerobic | yes | 99.069 | yes |
| aerobic | no | 97.9 | yes |
| halophile | no | 80.68 | no |
| spore-forming | no | 93.83 | no |
| glucose-ferment | no | 75.921 | no |
| thermophile | no | 97.646 | yes |
| glucose-util | no | 62.754 | no |
External links
@ref: 615
culture collection no.: DSM 1741, NCIMB 8310, Norway 4
straininfo link
- @ref: 73563
- straininfo: 389477
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 615 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1741) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1741 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 73563 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389477.1 | StrainInfo: A central database for resolving microbial strain identifiers |