Strain identifier
BacDive ID: 4052
Type strain: 
Species: Desulfomicrobium macestii
Strain Designation: M-9
Strain history: <- VKM <- G.I. Gogotova and M.B. Vainstein, M-9
NCBI tax ID(s): 90731 (species)
version 8.1 (current version)
General
@ref: 1612
BacDive-ID: 4052
DSM-Number: 4194
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfomicrobium macestii M-9 is an anaerobe, mesophilic bacterium that was isolated from sulfide spring.
NCBI tax id
- NCBI tax id: 90731
- Matching level: species
strain history
- @ref: 1612
- history: <- VKM <- G.I. Gogotova and M.B. Vainstein, M-9
doi: 10.13145/bacdive4052.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfomicrobiaceae
- genus: Desulfomicrobium
- species: Desulfomicrobium macestii
- full scientific name: Desulfomicrobium macestii (Gogotova and Vainstein 1989) Hippe et al. 2003
synonyms
- @ref: 20215
- synonym: Desulfobacterium macestii
@ref: 1612
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfomicrobiaceae
genus: Desulfomicrobium
species: Desulfomicrobium macestii
full scientific name: Desulfomicrobium macestii (Gogotova and Vainstein 1989) Hippe et al. 2003
strain designation: M-9
type strain: yes
Morphology
colony morphology
- @ref: 1612
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 1612
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 1612
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1612
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1612
- sample type: sulfide spring
- geographic location: Macesta
- country: USSR
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_5694.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_533;96_2736;97_3363;98_4242;99_5694&stattab=map
- Last taxonomy: Desulfomicrobium
- 16S sequence: AJ237604
- Sequence Identity:
- Total samples: 2243
- soil counts: 172
- aquatic counts: 1917
- animal counts: 82
- plant counts: 72
Safety information
risk assessment
- @ref: 1612
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1612
- description: Desulfobacterium macestii 16S rRNA gene, partial, strain DSM 4194
- accession: AJ237604
- length: 1503
- database: ena
- NCBI tax ID: 90731
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfomicrobium macestii DSM 4194 | GCA_014873765 | scaffold | ncbi | 90731 |
| 66792 | Desulfomicrobium macestii strain DSM 4194 | 90731.3 | wgs | patric | 90731 |
| 66792 | Desulfomicrobium macestii DSM 4194 | 2875778839 | draft | img | 90731 |
GC content
- @ref: 1612
- GC-content: 58.0-59.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 52.444 | no |
| gram-positive | no | 98.952 | no |
| anaerobic | yes | 99.138 | no |
| aerobic | no | 97.902 | yes |
| halophile | no | 82.451 | no |
| spore-forming | no | 94.154 | no |
| glucose-util | no | 59.835 | no |
| thermophile | no | 98.255 | yes |
| motile | yes | 91.284 | no |
| glucose-ferment | no | 75.979 | no |
External links
@ref: 1612
culture collection no.: DSM 4194, VKM B-1598
straininfo link
- @ref: 73557
- straininfo: 47809
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1612 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4194) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4194 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 73557 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47809.1 | StrainInfo: A central database for resolving microbial strain identifiers |