Strain identifier
BacDive ID: 4047
Type strain: 
Species: Desulfonatronospira thiodismutans
Strain Designation: ASO3-1
Strain history: <- D.Y. Sorokin; ASO3-1
NCBI tax ID(s): 555779 (strain), 488939 (species)
version 8.1 (current version)
General
@ref: 7884
BacDive-ID: 4047
DSM-Number: 19093
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfonatronospira thiodismutans ASO3-1 is an anaerobe, mesophilic bacterium that was isolated from sediments from hypersaline soda lake.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 488939 | species |
| 555779 | strain |
strain history
- @ref: 7884
- history: <- D.Y. Sorokin; ASO3-1
doi: 10.13145/bacdive4047.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfohalobiaceae
- genus: Desulfonatronospira
- species: Desulfonatronospira thiodismutans
- full scientific name: Desulfonatronospira thiodismutans Sorokin et al. 2008
@ref: 7884
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfohalobiaceae
genus: Desulfonatronospira
species: Desulfonatronospira thiodismutans
full scientific name: Desulfonatronospira thiodismutans Sorokin et al. 2008
strain designation: ASO3-1
type strain: yes
Morphology
colony morphology
- @ref: 7884
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 7884
- name: DESULFONATRONOSPIRA MEDIUM (DSMZ Medium 1101)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1101
- composition: Name: DESULFONATRONOSPIRA MEDIUM (DSMZ Medium 1101) Composition: Na2CO3 94.7159 g/l NaCl 14.9551 g/l NaHCO3 14.9551 g/l Na-L-lactate 2.19342 g/l Na2SO3 1.29611 g/l K2HPO4 0.498504 g/l Na2S x 9 H2O 0.239282 g/l MgCl2 x 6 H2O 0.199402 g/l NH4Cl 0.199402 g/l Yeast extract 0.0498504 g/l EDTA 0.00498504 g/l FeSO4 x 7 H2O 0.00219342 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000199402 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnSO4 x 7 H2O 9.97009e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l CuCl2 x 2 H2O 2.99103e-05 g/l NiCl2 x 6 H2O 2.99103e-05 g/l MnCl2 x 4 H2O 2.99103e-05 g/l H3BO3 2.99103e-05 g/l Na2MoO4 x 2 H2O 2.99103e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 7884
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 7884
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 7884
- sample type: sediments from hypersaline soda lake
- geographic location: South Siberia
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Sediment |
| #Condition | #Alkaline | |
| #Condition | #Saline | |
| #Environmental | #Aquatic | #Non-marine Saline and Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_8015.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_389;96_3705;97_4553;98_5843;99_8015&stattab=map
- Last taxonomy: Desulfonatronospira
- 16S sequence: EU296537
- Sequence Identity:
- Total samples: 34
- aquatic counts: 33
- animal counts: 1
Safety information
risk assessment
- @ref: 7884
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7884
- description: Desulfonatronospira dismutants strain ASO3-1 16S ribosomal RNA gene, partial sequence
- accession: EU296537
- length: 1528
- database: ena
- NCBI tax ID: 555779
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfonatronospira thiodismutans ASO3-1 | GCA_000174435 | scaffold | ncbi | 555779 |
| 66792 | Desulfonatronospira thiodismutans ASO3-1 | 555779.3 | wgs | patric | 555779 |
| 66792 | Desulfonatronospira thiodismutans ASO3-1 | 643886196 | complete | img | 555779 |
GC content
- @ref: 7884
- GC-content: 50
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 7884
culture collection no.: DSM 19093, UNIQEM U234
straininfo link
- @ref: 73552
- straininfo: 399707
literature
- topic: Metabolism
- Pubmed-ID: 18451053
- title: Sulfidogenesis under extremely haloalkaline conditions by Desulfonatronospira thiodismutans gen. nov., sp. nov., and Desulfonatronospira delicata sp. nov. - a novel lineage of Deltaproteobacteria from hypersaline soda lakes.
- authors: Sorokin DY, Tourova TP, Henstra AM, Stams AJM, Galinski EA, Muyzer G
- journal: Microbiology (Reading)
- DOI: 10.1099/mic.0.2007/015628-0
- year: 2008
- mesh: Acetates/metabolism, Acetyl Coenzyme A/metabolism, Anaerobiosis, Betaine/metabolism, Carbon/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification/*metabolism, Formates/metabolism, Genes, rRNA, Geologic Sediments/*microbiology, Hydrogen/metabolism, Hydrogen-Ion Concentration, Metabolic Networks and Pathways, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sulfides/*metabolism, Sulfites/metabolism, Thiosulfates/metabolism
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7884 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19093) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19093 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73552 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399707.1 | StrainInfo: A central database for resolving microbial strain identifiers |