Strain identifier
BacDive ID: 4018
Type strain: 
Species: Desulfocapsa thiozymogenes
Strain Designation: Bra2
Strain history: <- F. Bak, Bra2
NCBI tax ID(s): 1195245 (strain), 53321 (species)
version 8.1 (current version)
General
@ref: 3086
BacDive-ID: 4018
DSM-Number: 7269
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfocapsa thiozymogenes Bra2 is an anaerobe, mesophilic bacterium that was isolated from fresh water sediment.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 53321 | species |
| 1195245 | strain |
strain history
- @ref: 3086
- history: <- F. Bak, Bra2
doi: 10.13145/bacdive4018.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfobacterales
- family: Desulfobulbaceae
- genus: Desulfocapsa
- species: Desulfocapsa thiozymogenes
- full scientific name: Desulfocapsa thiozymogenes Janssen et al. 1997
@ref: 3086
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobulbaceae
genus: Desulfocapsa
species: Desulfocapsa thiozymogenes
full scientific name: Desulfocapsa thiozymogenes Janssen et al. 1997
strain designation: Bra2
type strain: yes
Morphology
colony morphology
- @ref: 3086
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 3086
- name: DESULFOLUTIVIBRIO MEDIUM (DSMZ Medium 386)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium386.pdf
culture temp
- @ref: 3086
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 3086
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 3086
- sample type: fresh water sediment
- geographic location: Lake Braband
- country: Denmark
- origin.country: DNK
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 3086
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3086
- description: D.thiozymogenes 16S ribosomal RNA
- accession: X95181
- length: 1463
- database: ena
- NCBI tax ID: 1195245
Genome sequences
- @ref: 66792
- description: Desulfocapsa thiozymogenes DSM 7269
- accession: 2514885009
- assembly level: draft
- database: img
- NCBI tax ID: 53321
GC content
- @ref: 3086
- GC-content: 54.7
External links
@ref: 3086
culture collection no.: DSM 7269
straininfo link
- @ref: 73523
- straininfo: 48396
literature
- topic: Phylogeny
- Pubmed-ID: 10653757
- title: In situ analysis of sulfate-reducing bacteria related to Desulfocapsa thiozymogenes in the chemocline of meromictic Lake Cadagno (Switzerland).
- authors: Tonolla M, Demarta A, Peduzzi S, Hahn D, Peduzzi R
- journal: Appl Environ Microbiol
- DOI: 10.1128/AEM.66.2.820-824.2000
- year: 2000
- mesh: DNA Probes, Deltaproteobacteria/classification/*genetics/physiology, Fresh Water/*microbiology, Gene Library, Genes, rRNA, In Situ Hybridization, Microscopy, Fluorescence, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sulfur-Reducing Bacteria/classification/*genetics/*physiology, Switzerland, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3086 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7269) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7269 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 73523 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48396.1 | StrainInfo: A central database for resolving microbial strain identifiers |