Strain identifier
BacDive ID: 3986
Type strain: 
Species: Desulfofaba fastidiosa
Strain Designation: P2
Strain history: <- L. Abildgaard, University of Aarhus, Department of Microbiology, Institute of Biological Sciences, Denmark; P2 <- L. Abildgaard {2002}
NCBI tax ID(s): 247157 (species)
version 8.1 (current version)
General
@ref: 5781
BacDive-ID: 3986
DSM-Number: 15249
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, motile, rod-shaped
description: Desulfofaba fastidiosa P2 is an anaerobe, mesophilic, motile bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 247157
- Matching level: species
strain history
- @ref: 5781
- history: <- L. Abildgaard, University of Aarhus, Department of Microbiology, Institute of Biological Sciences, Denmark; P2 <- L. Abildgaard {2002}
doi: 10.13145/bacdive3986.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfobacterales
- family: Desulfobacteraceae
- genus: Desulfofaba
- species: Desulfofaba fastidiosa
- full scientific name: Desulfofaba fastidiosa Abildgaard et al. 2004
@ref: 5781
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobacteraceae
genus: Desulfofaba
species: Desulfofaba fastidiosa
full scientific name: Desulfofaba fastidiosa Abildgaard et al. 2004
strain designation: P2
type strain: yes
Morphology
cell morphology
- @ref: 30007
- cell length: 3.4 µm
- cell width: 1.25 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 5781
- name: DESULFOFABA MEDIUM (DSMZ Medium 193b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/193b
- composition: Name: DESULFOFABA MEDIUM (DSMZ Medium 193b) Composition: MgCl2 x 6 H2O 11.4656 g/l NaCl 6.97906 g/l Na2SO4 2.99102 g/l CaCl2 x 2 H2O 1.49551 g/l Na2CO3 1.49551 g/l Na-propionate 1.49551 g/l KCl 0.498505 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299102 g/l KH2PO4 0.199402 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l Nicotinic acid 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5781 | positive | growth | 30 | mesophilic |
| 30007 | positive | growth | 05-33 | |
| 30007 | positive | optimum | 28 | mesophilic |
culture pH
- @ref: 30007
- ability: positive
- type: optimum
- pH: 6.8-7.1
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 5781 | anaerobe |
| 30007 | anaerobe |
spore formation
- @ref: 30007
- spore formation: no
halophily
- @ref: 30007
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 1-1.6 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30007 | 24996 | lactate | + | carbon source |
| 30007 | 17272 | propionate | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 5781
- sample type: marine sediment
- geographic location: Aarhus Bay
- country: Denmark
- origin.country: DNK
- continent: Europe
- latitude: 56.1556
- longitude: 10.3233
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_161293.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2724;96_60692;97_78584;98_106153;99_161293&stattab=map
- Last taxonomy: Desulfofaba fastidiosa subclade
- 16S sequence: AY268891
- Sequence Identity:
- Total samples: 224
- soil counts: 3
- aquatic counts: 219
- plant counts: 2
Safety information
risk assessment
- @ref: 5781
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5781
- description: Desulfofaba fastidiosa 16S ribosomal RNA gene, partial sequence
- accession: AY268891
- length: 1406
- database: ena
- NCBI tax ID: 247157
GC content
- @ref: 5781
- GC-content: 48.8
External links
@ref: 5781
culture collection no.: DSM 15249, ATCC BAA 815
straininfo link
- @ref: 73492
- straininfo: 127237
literature
- topic: Phylogeny
- Pubmed-ID: 15023950
- title: Characterization of the marine propionate-degrading, sulfate-reducing bacterium Desulfofaba fastidiosa sp. nov. and reclassification of Desulfomusa hansenii as Desulfofaba hansenii comb. nov.
- authors: Abildgaard L, Ramsing NB, Finster K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02820-0
- year: 2004
- mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Deltaproteobacteria/*classification/genetics/growth & development/isolation & purification, Fermentation, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, Polymerase Chain Reaction, Propionates/metabolism, Seawater/*microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 5781 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15249) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15249 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30007 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26371 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73492 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID127237.1 | StrainInfo: A central database for resolving microbial strain identifiers |