Strain identifier

BacDive ID: 3976

Type strain: No

Species: Desulfopila corrodens

Strain Designation: IS4

Strain history: <- H. T. Dinh, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; IS4 (Desulfobacterium corrodens)

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General

@ref: 5919

BacDive-ID: 3976

DSM-Number: 15630

keywords: 16S sequence, anaerobe, mesophilic

description: Desulfopila corrodens IS4 is an anaerobe, mesophilic Proteobacterium that was isolated from enrichment culture with metallic iron and sulfate inoculated with marine sediment.

strain history

  • @ref: 5919
  • history: <- H. T. Dinh, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; IS4 (Desulfobacterium corrodens)

doi: 10.13145/bacdive3976.20230509.8.1

Name and taxonomic classification

@ref: 5919

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobulbaceae

genus: Desulfopila

species: Desulfopila corrodens

full scientific name: Desulfopila corrodens

strain designation: IS4

type strain: no

Morphology

colony morphology

  • @ref: 5919
  • incubation period: 8-14 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5919MARINE DESULFOVIBRIO COMPLEX MEDIUM (DSMZ Medium 1040)yeshttps://mediadive.dsmz.de/medium/1040Name: MARIDESULFOVIBRIO MEDIUM (DSMZ Medium 1040) Composition: Sea Salt 34.9301 g/l Na-DL-lactate 2.49501 g/l Yeast extract 0.998004 g/l Na2CO3 0.998004 g/l Na2S x 9 H2O 0.299401 g/l MgSO4 x 7 H2O 0.0299401 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279441 g/l CoCl2 x 6 H2O 0.00179641 g/l ZnSO4 x 7 H2O 0.00179641 g/l CaCl2 x 2 H2O 0.000998004 g/l FeSO4 x 7 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l AlK(SO4)2 x 12 H2O 0.000179641 g/l CuSO4 x 5 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l Na2WO4 x 2 H2O 9.98004e-05 g/l Na2SeO4 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l Vitamin B12 9.98004e-07 g/l Distilled water
5919DESULFOBACTERIUM CORRODENS MEDIUM (DSMZ Medium 1010)yeshttps://mediadive.dsmz.de/medium/1010Name: DESULFOPILA CORRODENS MEDIUM (DSMZ Medium 1010) Composition: NaCl 26.2948 g/l MgSO4 x 7 H2O 6.77291 g/l MgCl2 x 6 H2O 5.67729 g/l Na-DL-lactate 2.29084 g/l CaCl2 x 2 H2O 1.46414 g/l Na2CO3 0.996016 g/l KCl 0.657371 g/l Na2S x 9 H2O 0.298805 g/l NH4Cl 0.249004 g/l KH2PO4 0.199203 g/l KBr 0.0896414 g/l HCl 0.00249004 g/l FeCl2 x 4 H2O 0.00149402 g/l NaOH 0.000498008 g/l Sodium resazurin 0.000498008 g/l Pyridoxine hydrochloride 0.000298805 g/l Thiamine-HCl x 2 H2O 0.000199203 g/l Nicotinic acid 0.000199203 g/l CoCl2 x 6 H2O 0.000189243 g/l Calcium pantothenate 9.96016e-05 g/l Vitamin B12 9.96016e-05 g/l MnCl2 x 4 H2O 9.96016e-05 g/l p-Aminobenzoic acid 7.96813e-05 g/l ZnCl2 6.97211e-05 g/l Riboflavin 4.98008e-05 g/l Thiamine HCl 4.98008e-05 g/l Calcium D-(+)-pantothenate 4.98008e-05 g/l (DL)-alpha-Lipoic acid 4.98008e-05 g/l Na2MoO4 x 2 H2O 3.58566e-05 g/l NiCl2 x 6 H2O 2.39044e-05 g/l D-(+)-biotin 1.99203e-05 g/l Folic acid 1.99203e-05 g/l Biotin 1.99203e-05 g/l H3BO3 5.9761e-06 g/l Na2WO4 x 2 H2O 3.98406e-06 g/l Na2SeO3 x 5 H2O 2.98805e-06 g/l CuCl2 x 2 H2O 1.99203e-06 g/l Distilled water

culture temp

  • @ref: 5919
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 5919
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 5919
  • sample type: enrichment culture with metallic iron and sulfate inoculated with marine sediment
  • geographic location: North Sea, Wilhelmshaven
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Condition#Sulfuric

taxonmaps

  • @ref: 69479
  • File name: preview.99_40502.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_143;96_18888;97_23396;98_29551;99_40502&stattab=map
  • Last taxonomy: Desulfopila inferna subclade
  • 16S sequence: AY274450
  • Sequence Identity:
  • Total samples: 148
  • soil counts: 12
  • aquatic counts: 128
  • animal counts: 2
  • plant counts: 6

Sequence information

16S sequences

  • @ref: 5919
  • description: Desulfobacterium corrodens 16S ribosomal RNA gene, partial sequence
  • accession: AY274450
  • length: 1438
  • database: ena
  • NCBI tax ID: 241365

GC content

  • @ref: 5919
  • GC-content: 51.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 5919

culture collection no.: DSM 15630, JCM 39320

Reference

@idauthorscataloguedoi/urltitle
5919Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15630)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15630
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta