Strain identifier

BacDive ID: 3957

Type strain: Yes

Species: Desulfobacter postgatei

Strain history: <- F. Widdel, strain "Dangast" (2ac9)

NCBI tax ID(s): 879212 (strain), 2293 (species)

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General

@ref: 679

BacDive-ID: 3957

DSM-Number: 2034

keywords: 16S sequence, Bacteria, anaerobe

description: Desulfobacter postgatei DSM 2034 is an anaerobe bacterium that was isolated from brackish water ditch.

NCBI tax id

NCBI tax idMatching level
879212strain
2293species

strain history

  • @ref: 679
  • history: <- F. Widdel, strain "Dangast" (2ac9)

doi: 10.13145/bacdive3957.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfobacterales
  • family: Desulfobacteraceae
  • genus: Desulfobacter
  • species: Desulfobacter postgatei
  • full scientific name: Desulfobacter postgatei Widdel 1981

@ref: 679

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfobacter

species: Desulfobacter postgatei

full scientific name: Desulfobacter postgatei Widdel 1981

type strain: yes

Morphology

colony morphology

  • @ref: 679
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 679
  • name: DESULFOBACTER MEDIUM (DSMZ Medium 193)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/193
  • composition: Name: DESULFOBACTER MEDIUM (DSMZ Medium 193) Composition: NaCl 6.97906 g/l Na2SO4 2.99102 g/l Na-acetate x 3 H2O 2.49252 g/l Na2CO3 1.49551 g/l MgCl2 x 6 H2O 1.29611 g/l KCl 0.498505 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299102 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 679
  • growth: positive
  • type: growth
  • temperature: 32

Physiology and metabolism

oxygen tolerance

  • @ref: 679
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 679
  • sample type: brackish water ditch
  • geographic location: North Sea, near Jadebusen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Brackish
#Environmental#Terrestrial#Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_6411.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_40;96_3037;97_3732;98_4733;99_6411&stattab=map
  • Last taxonomy: Desulfobacter postgatei subclade
  • 16S sequence: AF418180
  • Sequence Identity:
  • Total samples: 5524
  • soil counts: 335
  • aquatic counts: 4872
  • animal counts: 261
  • plant counts: 56

Safety information

risk assessment

  • @ref: 679
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 679
  • description: Desulfobacter postgatei DSM 2034 16S ribosomal RNA gene, partial sequence
  • accession: AF418180
  • length: 1523
  • database: nuccore
  • NCBI tax ID: 879212

GC content

  • @ref: 679
  • GC-content: 45.9

External links

@ref: 679

culture collection no.: DSM 2034, ATCC 33911, VKM B-1643, Dangast (2ac9)

straininfo link

  • @ref: 73466
  • straininfo: 40759

literature

  • topic: Enzymology
  • Pubmed-ID: 16346478
  • title: Kinetics of Sulfate and Acetate Uptake by Desulfobacter postgatei.
  • authors: Ingvorsen K, Zehnder AJ, Jorgensen BB
  • journal: Appl Environ Microbiol
  • DOI: 10.1128/aem.47.2.403-408.1984
  • year: 1984

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
679Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2034)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2034
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73466Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40759.1StrainInfo: A central database for resolving microbial strain identifiers