Strain identifier

BacDive ID: 3940

Type strain: Yes

Species: Dermatophilus congolensis

Strain Designation: A-4, V.1328/1

Strain history: ATCC 14637 <-- M. A. Gordon A-4 <-- P. K. C. Austwick V.1328/1.

NCBI tax ID(s): 1121387 (strain), 1863 (species)

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General

@ref: 11578

BacDive-ID: 3940

DSM-Number: 44180

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Dermatophilus congolensis A-4 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from scabs from cattle .

NCBI tax id

NCBI tax idMatching level
1863species
1121387strain

strain history

@refhistory
11578<- JCM <- ATCC <- M.A. Gordon, A-4 <- P.K.C. Austwick, V.1328/1
67770ATCC 14637 <-- M. A. Gordon A-4 <-- P. K. C. Austwick V.1328/1.

doi: 10.13145/bacdive3940.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Dermatophilaceae
  • genus: Dermatophilus
  • species: Dermatophilus congolensis
  • full scientific name: Dermatophilus congolensis (Van Saceghem 1915) Gordon 1964 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Dermatophilus congolensis

@ref: 11578

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Dermatophilaceae

genus: Dermatophilus

species: Dermatophilus congolensis

full scientific name: Dermatophilus congolensis (van Saceghem 1915) Gordon 1964 emend. Nouioui et al. 2018

strain designation: A-4, V.1328/1

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

colony morphology

@refincubation periodmedium usedcolony color
2001310-14 daysISP 3
2001310-14 daysISP 6Yellow

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
20013ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20013ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
11578TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yesName: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/535

culture temp

@refgrowthtypetemperaturerange
20013positiveoptimum37mesophilic
11578positivegrowth37mesophilic
57695positivegrowth30-42
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57695
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.991

halophily

  • @ref: 20013
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2001317234glucose+
2001322599arabinose+
2001317992sucrose+
2001318222xylose-
2001317268myo-inositol+
2001329864mannitol+
2001328757fructose+
2001326546rhamnose+
2001316634raffinose+
2001362968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
20013+-+-+-+--++---+----

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
20013-+++--+---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic location
11578scabs from cattle (bovine streptotrichosis)North Rhodesia
57695Cattle scabs,bovine streptotrichosis
67770Scabs of cattle (bovine streptotrichosis)

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Other#Wound

taxonmaps

  • @ref: 69479
  • File name: preview.99_108367.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_43441;97_55601;98_73599;99_108367&stattab=map
  • Last taxonomy: Dermatophilus congolensis subclade
  • 16S sequence: AJ243918
  • Sequence Identity:
  • Total samples: 710
  • soil counts: 156
  • aquatic counts: 126
  • animal counts: 383
  • plant counts: 45

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
200132
115782Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Dermatophilus congolensis small subunit ribosomal RNA sequenceM590571470ena1863
20218Dermatophilus congolensis partial 16S rRNA gene, DSM 44180 type strainAJ2439181464ena1121387
67770Dermatophilus congolensis gene for 16S rRNA, partial sequence, strain: NBRC 105199AB5508001476ena1121387

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Dermatophilus congolensis NCTC13039GCA_900187045completencbi1863
66792Dermatophilus congolensis DSM 44180 = NBRC 1051991121387.3wgspatric1121387
66792Dermatophilus congolensis strain NCTC130391863.3completepatric1863
66792Dermatophilus congolensis DSM 441802523533584draftimg1121387
66792Dermatophilus congolensis NCTC 130392773857907completeimg1863
67770Dermatophilus congolensis DSM 44180 = NBRC 105199GCA_000429885scaffoldncbi1121387

GC content

@refGC-contentmethod
1157860.1Buoyant density centrifugation (BD)
1157858.1thermal denaturation, midpoint method (Tm)
6777059.4genome sequence analysis
6777057.6-58.6thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno87no
motileyes63.764no
flagellatedno89.717no
gram-positiveyes82.65no
anaerobicno94.344yes
aerobicyes57.762yes
halophileno86.9no
spore-formingno84.989no
thermophileno97.036yes
glucose-utilyes86.997no
glucose-fermentno52.281no

External links

@ref: 11578

culture collection no.: DSM 44180, ATCC 14637, CCUG 47448, JCM 8106, NRRL B-2350, NCTC 13039, NBRC 105199

straininfo link

  • @ref: 73448
  • straininfo: 36131

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11578Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44180)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44180
20013Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM44180.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
57695Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47448)https://www.ccug.se/strain?id=47448
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
73448Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36131.1StrainInfo: A central database for resolving microbial strain identifiers