Strain identifier
BacDive ID: 3895
Type strain: 
Species: Deinococcus piscis
Strain Designation: 3aX
Strain history: <- R. Shashidhar, Food Technology Division, Bhabha Atomic Res. Centre, FIPLY, Trombay, India; 3aX
NCBI tax ID(s): 394230 (species)
version 8.1 (current version)
General
@ref: 8304
BacDive-ID: 3895
DSM-Number: 19767
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped
description: Deinococcus piscis 3aX is an aerobe, mesophilic, Gram-positive bacterium that was isolated from black pomfret, Parastromateus niger, a marine fish.
NCBI tax id
- NCBI tax id: 394230
- Matching level: species
strain history
- @ref: 8304
- history: <- R. Shashidhar, Food Technology Division, Bhabha Atomic Res. Centre, FIPLY, Trombay, India; 3aX
doi: 10.13145/bacdive3895.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus piscis
- full scientific name: Deinococcus piscis Shashidhar and Bandekar 2009
@ref: 8304
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus piscis
full scientific name: Deinococcus piscis Shashidhar and Bandekar 2009
strain designation: 3aX
type strain: yes
Morphology
cell morphology
- @ref: 28977
- gram stain: positive
- cell shape: coccus-shaped
- motility: no
pigmentation
- @ref: 28977
- production: yes
Culture and growth conditions
culture medium
- @ref: 8304
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8304 | positive | growth | 28 | mesophilic |
| 28977 | positive | growth | 20-42 | |
| 28977 | positive | optimum | 35 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 28977 | positive | growth | 06-09 | alkaliphile |
| 28977 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 28977
- oxygen tolerance: aerobe
spore formation
- @ref: 28977
- spore formation: no
halophily
- @ref: 28977
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-4 %
murein
- @ref: 8304
- murein short key: A21.01
- type: A3ß L-Orn-Gly2-3
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 28977 | 28757 | fructose | + | carbon source |
| 28977 | 17234 | glucose | + | carbon source |
| 28977 | 17306 | maltose | + | carbon source |
| 28977 | 17992 | sucrose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 28977 | catalase | + | 1.11.1.6 |
| 28977 | gelatinase | + | |
| 28977 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 8304
- sample type: black pomfret, Parastromateus niger, a marine fish
- host species: Parastromateus niger
- geographic location: Mumbai
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host | #Fishes |
taxonmaps
- @ref: 69479
- File name: preview.99_184816.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_181;96_599;97_701;98_120273;99_184816&stattab=map
- Last taxonomy: Deinococcus piscis subclade
- 16S sequence: DQ683348
- Sequence Identity:
- Total samples: 716
- soil counts: 44
- aquatic counts: 45
- animal counts: 618
- plant counts: 9
Safety information
risk assessment
- @ref: 8304
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8304
- description: Deinococcus piscis strain 3ax 16S ribosomal RNA gene, partial sequence
- accession: DQ683348
- length: 1464
- database: ena
- NCBI tax ID: 394230
External links
@ref: 8304
culture collection no.: DSM 19767, MTCC 9123
straininfo link
- @ref: 73405
- straininfo: 405068
literature
- topic: Phylogeny
- Pubmed-ID: 19625434
- title: Deinococcus piscis sp. nov., a radiation-resistant bacterium isolated from a marine fish.
- authors: Shashidhar R, Bandekar JR
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.003046-0
- year: 2009
- mesh: Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Deinococcus/classification/genetics/*isolation & purification/*radiation effects, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Perciformes/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 8304 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19767) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19767 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 28977 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25411 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73405 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405068.1 | StrainInfo: A central database for resolving microbial strain identifiers |