Strain identifier
BacDive ID: 3884
Type strain: 
Species: Deinococcus ficus
Strain Designation: CON-1, uk
Strain history: CIP <- 2006, DSMZ, Deinococcus mumbaiensis <- R. Shashidhar, Bhabha Atomic Res. Cent., Mumbaï, India: strain CON-1
NCBI tax ID(s): 317577 (species)
version 8.1 (current version)
General
@ref: 6959
BacDive-ID: 3884
DSM-Number: 17424
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped
description: Deinococcus ficus CON-1 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from contaminated nutrient plate.
NCBI tax id
- NCBI tax id: 317577
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6959 | <- R. Shashidhar |
| 119345 | CIP <- 2006, DSMZ, Deinococcus mumbaiensis <- R. Shashidhar, Bhabha Atomic Res. Cent., Mumbaï, India: strain CON-1 |
doi: 10.13145/bacdive3884.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus ficus
- full scientific name: Deinococcus ficus Lai et al. 2006
synonyms
- @ref: 20215
- synonym: Deinococcus mumbaiensis
@ref: 6959
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus ficus
full scientific name: Deinococcus ficus Lai et al. 2006 emend. Kämpfer 2009
strain designation: CON-1, uk
type strain: no
Morphology
cell morphology
- @ref: 119345
- gram stain: positive
- cell shape: coccus-shaped
Culture and growth conditions
culture medium
- @ref: 119345
- name: CIP Medium 20
- growth: yes
- link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20
culture temp
- @ref: 60816
- growth: positive
- type: growth
- temperature: 28-30
- range: mesophilic
culture pH
- @ref: 60816
- ability: positive
- type: growth
- pH: 7.2
Physiology and metabolism
oxygen tolerance
- @ref: 60816
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 6959 | contaminated nutrient plate | Provision Maharastra, Place munbia | India | IND | Asia |
| 60816 | India | IND | Asia | ||
| 119345 | Environment, Contaminating air |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Engineered | #Laboratory | #Lab enrichment |
taxonmaps
- @ref: 69479
- File name: preview.99_2273.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_1228;97_1455;98_1775;99_2273&stattab=map
- Last taxonomy: Deinococcus ficus subclade
- 16S sequence: DQ003135
- Sequence Identity:
- Total samples: 1885
- soil counts: 240
- aquatic counts: 386
- animal counts: 1199
- plant counts: 60
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 6959 | 1 | Risk group (German classification) |
| 119345 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 6959
- description: Deinococcus mumbaiensis strain CON-1 16S ribosomal RNA gene, partial sequence
- accession: DQ003135
- length: 1413
- database: ena
- NCBI tax ID: 317577
GC content
- @ref: 6959
- GC-content: 70
External links
@ref: 6959
culture collection no.: DSM 17424, CIP 109231, MTCC 7297, CCUG 55997
straininfo link
- @ref: 73394
- straininfo: 291128
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16445756 | Deinococcus mumbaiensis sp. nov., a radiation-resistant pleomorphic bacterium isolated from Mumbai, India. | Shashidhar R, Bandekar JR | FEMS Microbiol Lett | 10.1111/j.1574-6968.2005.00033.x | 2006 | Agar, Bacterial Typing Techniques, Base Composition, Culture Media, DNA, Bacterial/analysis, Deinococcus/*classification/genetics/isolation & purification/*radiation effects, Equipment Contamination, *Gamma Rays, India, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Cultivation |
| Phylogeny | 19196779 | Deinococcus mumbaiensis Shashidhar and Bandekar 2006 is a later heterotypic synonym of Deinococcus ficus Lai et al. 2006. | Kampfer P | Int J Syst Evol Microbiol | 10.1099/ijs.0.002824-0 | 2009 | Classification, Deinococcus/chemistry/*classification, Fatty Acids/analysis, Ficus/microbiology, Species Specificity |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6959 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17424) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17424 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 60816 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 55997) | https://www.ccug.se/strain?id=55997 | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73394 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID291128.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 119345 | Curators of the CIP | Collection of Institut Pasteur (CIP 109231) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109231 |