General

@ref: 15585

BacDive-ID: 3880

DSM-Number: 21231

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Deinococcus pimensis KR-235 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil, sonoran desert.

NCBI tax id

strain history

• @ref: 15585
• history: <- P. Kämpfer <- F.A. Rainey; KR 235

doi: 10.13145/bacdive3880.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/deinococcota
• domain: Bacteria
• phylum: Deinococcota
• class: Deinococci
• order: Deinococcales
• family: Deinococcaceae
• genus: Deinococcus
• species: Deinococcus pimensis
• full scientific name: Deinococcus pimensis Rainey and da Costa 2005

@ref: 15585

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Deinococcales

family: Deinococcaceae

genus: Deinococcus

species: Deinococcus pimensis

full scientific name: Deinococcus pimensis Rainey and da Costa 2005

strain designation: KR-235

type strain: yes

Morphology

cell morphology

• @ref: 69480
• gram stain: positive
• confidence: 97.327

Culture and growth conditions

culture medium

• @ref: 15585
• name: R2A MEDIUM (DSMZ Medium 830)
• growth: yes
• link: https://mediadive.dsmz.de/medium/830
• composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

• @ref: 15585
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Physiology and metabolism

spore formation

Isolation, sampling and environmental information

isolation

• @ref: 15585
• sample type: soil, sonoran desert
• geographic location: Arizona
• country: USA
• origin.country: USA
• continent: North America

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_6983.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_614;96_3279;97_4021;98_5128;99_6983&stattab=map
• Last taxonomy: Deinococcus pimensis subclade
• 16S sequence: AY743277
• Sequence Identity:
• Total samples: 1124
• soil counts: 687
• aquatic counts: 148
• animal counts: 168
• plant counts: 121

Safety information

risk assessment

• @ref: 15585
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 15585
• description: Deinococcus pimensis strain KR-235 16S ribosomal RNA gene, partial sequence
• accession: AY743277
• length: 1461
• database: ena
• NCBI tax ID: 309888

Genome sequences

GC content

• @ref: 15585
• GC-content: 71.5

Genome-based predictions

predictions

External links

@ref: 15585

culture collection no.: DSM 21231, LMG 22244, NRRL B-23994

straininfo link

• @ref: 73390
• straininfo: 130933

literature

• topic: Phylogeny
• Pubmed-ID: 18096345
• title: Deinococcus misasensis and Deinococcus roseus, novel members of the genus Deinococcus, isolated from a radioactive site in Japan.
• authors: Asker D, Awad TS, Beppu T, Ueda K
• journal: Syst Appl Microbiol
• DOI: 10.1016/j.syapm.2007.10.002
• year: 2007
• mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Deinococcus/*classification/genetics/*isolation & purification/radiation effects, Fatty Acids/analysis, Gamma Rays, Genes, rRNA, Japan, Molecular Sequence Data, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/biosynthesis, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Ultraviolet Rays, *Water Microbiology
• topic2: Metabolism

Reference