Strain identifier
BacDive ID: 3819
Type strain: 
Species: Spirosoma linguale
Strain Designation: 1, Claus 1
Strain history: <- D. Claus, 1 (Spirosoma sp.)
NCBI tax ID(s): 504472 (strain), 108 (species)
version 8.1 (current version)
General
@ref: 2053
BacDive-ID: 3819
DSM-Number: 74
keywords: Bacteria, mesophilic
description: Spirosoma linguale 1 is a mesophilic bacterium that was isolated from laboratory water bath.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 108 | species |
| 504472 | strain |
strain history
- @ref: 2053
- history: <- D. Claus, 1 (Spirosoma sp.)
doi: 10.13145/bacdive3819.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Spirosomataceae
- genus: Spirosoma
- species: Spirosoma linguale
- full scientific name: Spirosoma linguale Migula 1894 (Approved Lists 1980)
@ref: 2053
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Spirosomaceae
genus: Spirosoma
species: Spirosoma linguale
full scientific name: Spirosoma linguale Migula 1894 emend. Larkin et al. 1977 emend. Hahnke et al. 2016
strain designation: 1, Claus 1
type strain: yes
Morphology
multimedia
- @ref: 66793
- multimedia content: EM_DSM_74_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
- @ref: 2053
- name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)
- growth: yes
- link: https://mediadive.dsmz.de/medium/7
- composition: Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water
culture temp
- @ref: 2053
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 2053
- sample type: laboratory water bath
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Laboratory |
| #Environmental | #Aquatic |
Safety information
risk assessment
- @ref: 2053
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
| @ref | GC-content | method |
|---|---|---|
| 2053 | 51.5 | |
| 2053 | 50.1 | sequence analysis |
External links
@ref: 2053
culture collection no.: DSM 74, ATCC 33905, LMG 10896
straininfo link
- @ref: 73330
- straininfo: 4989
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18048741 | Spirosoma rigui sp. nov., isolated from fresh water. | Baik KS, Kim MS, Park SC, Lee DW, Lee SD, Ka JO, Choi SK, Seong CN | Int J Syst Evol Microbiol | 10.1099/ijs.0.65302-0 | 2007 | Bacterial Typing Techniques, Base Composition, Cytophagaceae/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Korea, Locomotion/physiology, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Vitamin K 2/analysis | Genetics |
| Phylogeny | 18218952 | Rudanella lutea gen. nov., sp. nov., isolated from an air sample in Korea. | Weon HY, Noh HJ, Son JA, Jang HB, Kim BY, Kwon SW, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/ijs.0.65358-0 | 2008 | *Air Microbiology, Bacterial Typing Techniques, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Korea, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 19196773 | Spirosoma panaciterrae sp. nov., isolated from soil. | Ten LN, Xu JL, Jin FX, Im WT, Oh HM, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.002436-0 | 2009 | Cytophagaceae/chemistry/*classification/genetics/isolation & purification, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity | Genetics |
| Phylogeny | 19329617 | Spirosoma spitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma. | Finster KW, Herbert RA, Lomstein BA | Int J Syst Evol Microbiol | 10.1099/ijs.0.002725-0 | 2009 | Arctic Regions, Bacterial Typing Techniques, Cluster Analysis, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Norway, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology | Genetics |
| Phylogeny | 20190021 | Fibrella aestuarina gen. nov., sp. nov., a filamentous bacterium of the family Cytophagaceae isolated from a tidal flat, and emended description of the genus Rudanella Weon et al. 2008. | Filippini M, Svercel M, Laczko E, Kaech A, Ziegler U, Bagheri HC | Int J Syst Evol Microbiol | 10.1099/ijs.0.020503-0 | 2010 | Base Composition, Cluster Analysis, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, *Geologic Sediments, Germany, Hydrogen-Ion Concentration, Molecular Sequence Data, North Sea, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature | Genetics |
| Phylogeny | 23291764 | Identification and characterization of cellobiose 2-epimerases from various aerobes. | Ojima T, Saburi W, Yamamoto T, Mori H, Matsui H | Biosci Biotechnol Biochem | 10.1271/bbb.120742 | 2013 | Aerobiosis, Bacteria, Aerobic/chemistry/*enzymology, Bacterial Proteins/classification/*isolation & purification/*metabolism, Carbohydrate Epimerases/classification/*isolation & purification/*metabolism, Cellobiose/*metabolism, Enzyme Assays, Enzyme Stability, Escherichia coli/genetics, Glucose/metabolism, Hydrogen-Ion Concentration, Isoenzymes/classification/isolation & purification/metabolism, Kinetics, Lactose/metabolism, Mannose/metabolism, Phylogeny, Recombinant Proteins/classification/isolation & purification/metabolism, Species Specificity, Stereoisomerism, Substrate Specificity, Temperature | Enzymology |
| Phylogeny | 24748440 | Spirosoma radiotolerans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil. | Lee JJ, Srinivasan S, Lim S, Joe M, Im S, Bae SI, Park KR, Han JH, Park SH, Joo BM, Park SJ, Kim MK | Curr Microbiol | 10.1007/s00284-014-0584-x | 2014 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytophagaceae/*classification/*isolation & purification/physiology/radiation effects, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, *Gamma Rays, Korea, Locomotion, Microbial Viability/*radiation effects, Microscopy, Electron, Transmission, Molecular Sequence Data, Oryza, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ultraviolet Rays | Genetics |
| Phylogeny | 26297023 | Spirosoma fluviale sp. nov., isolated from river water. | Hatayama K, Kuno T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000433 | 2015 | Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Water Microbiology | Genetics |
| Phylogeny | 27031168 | Spirosoma aerophilum sp. nov., isolated from an air sample. | Kim SJ, Ahn JH, Weon HY, Hong SB, Seok SJ, Kim JS, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001037 | 2016 | *Air Movements, Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 28799031 | Spirosoma metallum sp. nov., isolated from an automobile air conditioning system. | Kim DU, Lee H, Lee S, Park S, Yoon JH, Park SY, Ka JO | Arch Microbiol | 10.1007/s00203-017-1424-8 | 2017 | Air Conditioning, *Air Microbiology, Automobiles, Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Phosphatidylethanolamines/metabolism, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA | Metabolism |
| Phylogeny | 29076068 | Spirosoma lituiforme sp. nov., isolated from soil. | Li W, Lee SY, Park S, Kim BO, Ten LN, Jung HY | J Microbiol | 10.1007/s12275-017-7255-0 | 2017 | Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/*isolation & purification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Phenotype, Phosphatidylethanolamines/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology | Phenotype |
| Phylogeny | 29116346 | Spirosoma humi sp. nov., Isolated from Soil in South Korea. | Weilan L, Lee JJ, Lee SY, Park S, Ten LN, Jung HY | Curr Microbiol | 10.1007/s00284-017-1384-x | 2017 | Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial, Fatty Acids/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology | Metabolism |
| Phylogeny | 29188342 | Spirosoma jeollabukense sp. nov., isolated from soil. | Li W, Ten LN, Lee SY, Lee DH, Jung HY | Arch Microbiol | 10.1007/s00203-017-1453-3 | 2017 | Base Composition, Cytophagaceae/genetics/*isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis/chemistry, Molecular Typing, Phenotype, Phospholipids/analysis/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Soil Microbiology | Phenotype |
| Phylogeny | 29214490 | Spirosoma migulaei sp. nov., isolated from soil. | Okiria J, Ten LN, Park SJ, Lee SY, Lee DH, Kang IK, Lee DS, Jung HY | J Microbiol | 10.1007/s12275-017-7377-4 | 2017 | Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology | Metabolism |
| Phylogeny | 29362880 | Spirosoma agri sp. nov., Isolated from Apple Orchard Soil. | Li W, Lee SY, Kang IK, Ten LN, Jung HY | Curr Microbiol | 10.1007/s00284-018-1434-z | 2018 | Base Composition/genetics, Cytophagaceae/classification/*genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, *Malus, Phenotype, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Metabolism |
| Phylogeny | 29392558 | Spirosoma pomorum sp. nov., isolated from apple orchard soil. | Li W, Lee SY, Kang IK, Ten LN, Jung HY | J Microbiol | 10.1007/s12275-018-7430-y | 2018 | Bacterial Typing Techniques, Base Composition, Base Sequence, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Malus/*microbiology, Phenotype, Phosphatidylethanolamines, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil, *Soil Microbiology, Species Specificity | Phenotype |
| Phylogeny | 29458662 | Spirosoma horti sp. nov., isolated from apple orchard soil. | Li W, Ten LN, Lee SY, Kang IK, Jung HY | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002614 | 2018 | Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, *Farms, Fatty Acids/chemistry, *Malus, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 30132752 | Spirosoma pollinicola sp. nov., isolated from pollen of common hazel (Corylus avellana L.). | Ambika Manirajan B, Suarez C, Ratering S, Rusch V, Geissler-Plaum R, Cardinale M, Schnell S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002973 | 2018 | Bacterial Typing Techniques, Base Composition, Base Sequence, Corylus/*microbiology, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, Pollen/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Pathogenicity | 34168257 | Morphological change of coiled bacterium Spirosoma linguale with acquisition of beta-lactam resistance. | Maeda T, Kotani H, Furusawa C | Sci Rep | 10.1038/s41598-021-92787-8 | 2021 | Anti-Bacterial Agents/pharmacology, Cytophagaceae/*drug effects/genetics/ultrastructure, Whole Genome Sequencing, beta-Lactam Resistance/genetics, beta-Lactams/pharmacology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2053 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 74) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-74 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 73330 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4989.1 | StrainInfo: A central database for resolving microbial strain identifiers |