We are hiring!

Strain identifier

BacDive ID: 3819

Type strain: Yes

Species: Spirosoma linguale

Strain Designation: 1, Claus 1

Strain history: <- D. Claus, 1 (Spirosoma sp.)

NCBI tax ID(s): 504472 (strain), 108 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 7.1 (current version)

General

@ref: 2053

BacDive-ID: 3819

DSM-Number: 74

keywords: Bacteria, mesophilic

description: Spirosoma linguale 1 is a mesophilic bacterium that was isolated from laboratory water bath.

NCBI tax id

NCBI tax idMatching level
108species
504472strain

strain history: <- D. Claus, 1 (Spirosoma sp.)

doi: 10.13145/bacdive3819.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Spirosomataceae
  • genus: Spirosoma
  • species: Spirosoma linguale
  • full scientific name: Spirosoma linguale Migula 1894 (Approved Lists 1980)

@ref: 2053

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Spirosomaceae

genus: Spirosoma

species: Spirosoma linguale

full scientific name: Spirosoma linguale Migula 1894 emend. Larkin et al. 1977 emend. Hahnke et al. 2016

strain designation: 1, Claus 1

type strain: yes

Morphology

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_74_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 2053
  • name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/7
  • composition: Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water

culture temp

  • @ref: 2053
  • growth: positive
  • type: growth
  • temperature: 26
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 2053
  • sample type: laboratory water bath

isolation source categories

Cat1Cat2
#Engineered#Laboratory
#Environmental#Aquatic

Safety information

risk assessment

  • @ref: 2053
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

@refGC-contentmethod
205351.5
205350.1sequence analysis

External links

@ref: 2053

culture collection no.: DSM 74, ATCC 33905, LMG 10896

straininfo link

@refpassport
20218http://www.straininfo.net/strains/21754
20218http://www.straininfo.net/strains/21752

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18048741Spirosoma rigui sp. nov., isolated from fresh water.Baik KS, Kim MS, Park SC, Lee DW, Lee SD, Ka JO, Choi SK, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.65302-02007Bacterial Typing Techniques, Base Composition, Cytophagaceae/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Korea, Locomotion/physiology, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Vitamin K 2/analysisGenetics
Phylogeny18218952Rudanella lutea gen. nov., sp. nov., isolated from an air sample in Korea.Weon HY, Noh HJ, Son JA, Jang HB, Kim BY, Kwon SW, Stackebrandt EInt J Syst Evol Microbiol10.1099/ijs.0.65358-02008*Air Microbiology, Bacterial Typing Techniques, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Korea, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny19196773Spirosoma panaciterrae sp. nov., isolated from soil.Ten LN, Xu JL, Jin FX, Im WT, Oh HM, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.002436-02009Cytophagaceae/chemistry/*classification/genetics/isolation & purification, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species SpecificityGenetics
Phylogeny19329617Spirosoma spitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma.Finster KW, Herbert RA, Lomstein BAInt J Syst Evol Microbiol10.1099/ijs.0.002725-02009Arctic Regions, Bacterial Typing Techniques, Cluster Analysis, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Norway, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil MicrobiologyGenetics
Phylogeny20190021Fibrella aestuarina gen. nov., sp. nov., a filamentous bacterium of the family Cytophagaceae isolated from a tidal flat, and emended description of the genus Rudanella Weon et al. 2008.Filippini M, Svercel M, Laczko E, Kaech A, Ziegler U, Bagheri HCInt J Syst Evol Microbiol10.1099/ijs.0.020503-02010Base Composition, Cluster Analysis, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, *Geologic Sediments, Germany, Hydrogen-Ion Concentration, Molecular Sequence Data, North Sea, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureGenetics
Phylogeny23291764Identification and characterization of cellobiose 2-epimerases from various aerobes.Ojima T, Saburi W, Yamamoto T, Mori H, Matsui HBiosci Biotechnol Biochem10.1271/bbb.1207422013Aerobiosis, Bacteria, Aerobic/chemistry/*enzymology, Bacterial Proteins/classification/*isolation & purification/*metabolism, Carbohydrate Epimerases/classification/*isolation & purification/*metabolism, Cellobiose/*metabolism, Enzyme Assays, Enzyme Stability, Escherichia coli/genetics, Glucose/metabolism, Hydrogen-Ion Concentration, Isoenzymes/classification/isolation & purification/metabolism, Kinetics, Lactose/metabolism, Mannose/metabolism, Phylogeny, Recombinant Proteins/classification/isolation & purification/metabolism, Species Specificity, Stereoisomerism, Substrate Specificity, TemperatureEnzymology
Phylogeny24748440Spirosoma radiotolerans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil.Lee JJ, Srinivasan S, Lim S, Joe M, Im S, Bae SI, Park KR, Han JH, Park SH, Joo BM, Park SJ, Kim MKCurr Microbiol10.1007/s00284-014-0584-x2014Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytophagaceae/*classification/*isolation & purification/physiology/radiation effects, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, *Gamma Rays, Korea, Locomotion, Microbial Viability/*radiation effects, Microscopy, Electron, Transmission, Molecular Sequence Data, Oryza, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ultraviolet RaysGenetics
Phylogeny26297023Spirosoma fluviale sp. nov., isolated from river water.Hatayama K, Kuno TInt J Syst Evol Microbiol10.1099/ijsem.0.0004332015Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Water MicrobiologyGenetics
Phylogeny27031168Spirosoma aerophilum sp. nov., isolated from an air sample.Kim SJ, Ahn JH, Weon HY, Hong SB, Seok SJ, Kim JS, Kwon SWInt J Syst Evol Microbiol10.1099/ijsem.0.0010372016*Air Movements, Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny28799031Spirosoma metallum sp. nov., isolated from an automobile air conditioning system.Kim DU, Lee H, Lee S, Park S, Yoon JH, Park SY, Ka JOArch Microbiol10.1007/s00203-017-1424-82017Air Conditioning, *Air Microbiology, Automobiles, Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Phosphatidylethanolamines/metabolism, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNAMetabolism
Phylogeny29076068Spirosoma lituiforme sp. nov., isolated from soil.Li W, Lee SY, Park S, Kim BO, Ten LN, Jung HYJ Microbiol10.1007/s12275-017-7255-02017Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/*isolation & purification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Phenotype, Phosphatidylethanolamines/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil MicrobiologyPhenotype
Phylogeny29116346Spirosoma humi sp. nov., Isolated from Soil in South Korea.Weilan L, Lee JJ, Lee SY, Park S, Ten LN, Jung HYCurr Microbiol10.1007/s00284-017-1384-x2017Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial, Fatty Acids/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil MicrobiologyMetabolism
Phylogeny29188342Spirosoma jeollabukense sp. nov., isolated from soil.Li W, Ten LN, Lee SY, Lee DH, Jung HYArch Microbiol10.1007/s00203-017-1453-32017Base Composition, Cytophagaceae/genetics/*isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis/chemistry, Molecular Typing, Phenotype, Phospholipids/analysis/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Soil MicrobiologyPhenotype
Phylogeny29214490Spirosoma migulaei sp. nov., isolated from soil.Okiria J, Ten LN, Park SJ, Lee SY, Lee DH, Kang IK, Lee DS, Jung HYJ Microbiol10.1007/s12275-017-7377-42017Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil MicrobiologyMetabolism
Phylogeny29362880Spirosoma agri sp. nov., Isolated from Apple Orchard Soil.Li W, Lee SY, Kang IK, Ten LN, Jung HYCurr Microbiol10.1007/s00284-018-1434-z2018Base Composition/genetics, Cytophagaceae/classification/*genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, *Malus, Phenotype, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil MicrobiologyMetabolism
Phylogeny29392558Spirosoma pomorum sp. nov., isolated from apple orchard soil.Li W, Lee SY, Kang IK, Ten LN, Jung HYJ Microbiol10.1007/s12275-018-7430-y2018Bacterial Typing Techniques, Base Composition, Base Sequence, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Malus/*microbiology, Phenotype, Phosphatidylethanolamines, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil, *Soil Microbiology, Species SpecificityPhenotype
Phylogeny29458662Spirosoma horti sp. nov., isolated from apple orchard soil.Li W, Ten LN, Lee SY, Kang IK, Jung HYInt J Syst Evol Microbiol10.1099/ijsem.0.0026142018Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, *Farms, Fatty Acids/chemistry, *Malus, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30132752Spirosoma pollinicola sp. nov., isolated from pollen of common hazel (Corylus avellana L.).Ambika Manirajan B, Suarez C, Ratering S, Rusch V, Geissler-Plaum R, Cardinale M, Schnell SInt J Syst Evol Microbiol10.1099/ijsem.0.0029732018Bacterial Typing Techniques, Base Composition, Base Sequence, Corylus/*microbiology, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, Pollen/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Pathogenicity34168257Morphological change of coiled bacterium Spirosoma linguale with acquisition of beta-lactam resistance.Maeda T, Kotani H, Furusawa CSci Rep10.1038/s41598-021-92787-82021Anti-Bacterial Agents/pharmacology, Cytophagaceae/*drug effects/genetics/ultrastructure, Whole Genome Sequencing, beta-Lactam Resistance/genetics, beta-Lactams/pharmacologyGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2053Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 74)https://www.dsmz.de/collection/catalogue/details/culture/DSM-74
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660