Strain identifier

BacDive ID: 38

Type strain: Yes

Species: Belnapia moabensis

Strain Designation: CP2C

Strain history: <- F. Garcia-Pichel, Arizona; CP2C <- G. S. N. Reddy

NCBI tax ID(s): 1121106 (strain), 365533 (species)

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General

@ref: 6490

BacDive-ID: 38

DSM-Number: 16746

keywords: genome sequence, 16S sequence, Bacteria, aerobe, non-halophilic, mesophilic, Gram-negative, coccus-shaped, colony-forming

description: Belnapia moabensis CP2C is an aerobe, non-halophilic, mesophilic bacterium that forms circular colonies and was isolated from biological soil crusts.

NCBI tax id

NCBI tax idMatching level
1121106strain
365533species

strain history

  • @ref: 6490
  • history: <- F. Garcia-Pichel, Arizona; CP2C <- G. S. N. Reddy

doi: 10.13145/bacdive38.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Belnapia
  • species: Belnapia moabensis
  • full scientific name: Belnapia moabensis Reddy et al. 2006

@ref: 6490

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Belnapia

species: Belnapia moabensis

full scientific name: Belnapia moabensis Reddy et al. 2006

strain designation: CP2C

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
23241negativecoccus-shapedno
69480negative99.999

colony morphology

  • @ref: 23241
  • colony color: red
  • colony shape: circular

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6490REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)yeshttps://mediadive.dsmz.de/medium/830cName: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
23241PGY-BG11yes

culture temp

@refgrowthtypetemperaturerange
6490positivegrowth30mesophilic
23241positivegrowth15-30
23241nogrowth37mesophilic
23241positiveoptimum25mesophilic

culture pH

@refabilitytypepH
23241positivegrowth6-8
23241positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 23241
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.954

halophily

  • @ref: 23241
  • halophily level: non-halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2324116136hydrogen sulfide-assimilation
2324115824D-fructose-builds acid from
2324112936D-galactose-builds acid from
2324117634D-glucose-builds acid from
2324117306maltose-builds acid from
2324116899D-mannitol-builds acid from
2324117924D-sorbitol-builds acid from
2324165327D-xylose-builds acid from
2324117754glycerol-builds acid from
2324130849L-arabinose-builds acid from
2324117992sucrose-builds acid from
2324130089acetate-carbon source
2324116708adenine-carbon source
2324116947citrate-carbon source
2324116040cytosine-carbon source
2324115824D-fructose-carbon source
2324112936D-galactose-carbon source
2324128053melibiose-carbon source
2324152071dextran-carbon source
2324116000ethanolamine-carbon source
2324129806fumarate-carbon source
2324117754glycerol-carbon source
2324115428glycine-carbon source
2324116235guanine-carbon source
2324135581indole-carbon source
2324116977L-alanine-carbon source
2324130849L-arabinose-carbon source
2324116467L-arginine-carbon source
2324129991L-aspartate-carbon source
2324117561L-cysteine-carbon source
2324129985L-glutamate-carbon source
2324118050L-glutamine-carbon source
2324115971L-histidine-carbon source
2324115603L-leucine-carbon source
2324118019L-lysine-carbon source
2324117295L-phenylalanine-carbon source
2324117115L-serine-carbon source
2324116828L-tryptophan-carbon source
2324117895L-tyrosine-carbon source
2324132544nicotinate-carbon source
2324115361pyruvate-carbon source
2324130031succinate-carbon source
23241132950tartrate-carbon source
2324117748thymidine-carbon source
2324117234glucose-fermentation
2324115824D-fructose-fermentation
2324117634D-glucose-fermentation
2324116024D-mannose-fermentation
2324117924D-sorbitol-fermentation
2324117716lactose-fermentation
2324117992sucrose-fermentation
23241casein-hydrolysis
2324162968cellulose-hydrolysis
232414853esculin-hydrolysis
2324128017starch-hydrolysis
2324115963ribitol+carbon source
2324117057cellobiose+carbon source
2324117634D-glucose+carbon source
2324116899D-mannitol+carbon source
2324116024D-mannose+carbon source
2324116634raffinose+carbon source
2324116988D-ribose+carbon source
2324117924D-sorbitol+carbon source
2324116551D-trehalose+carbon source
2324165327D-xylose+carbon source
2324116813galactitol+carbon source
2324129806fumarate+carbon source
2324117234glucose+carbon source
2324115443inulin+carbon source
2324117196L-asparagine+carbon source
2324117191L-isoleucine+carbon source
2324116643L-methionine+carbon source
2324117203L-proline+carbon source
2324162345L-rhamnose+carbon source
2324117266L-sorbose+carbon source
2324116857L-threonine+carbon source
2324116414L-valine+carbon source
2324124996lactate+carbon source
2324117716lactose+carbon source
2324117306maltose+carbon source
2324117268myo-inositol+carbon source
2324130623oxalate+carbon source
2324128851phenanthrene+carbon source
2324117992sucrose+carbon source
2324112936D-galactose+fermentation
2324117306maltose+fermentation
2324165327D-xylose+fermentation
2324130849L-arabinose+fermentation
2324117632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
2324128669bacitracinyesyes10 Unit
232418309polymyxin byesyes300 Unit
2324137943colistinyesyes10 µg
2324171415nitrofurantoinyesyes150 µg
232414885ethionamideyesyes25 µg
23241161680aztreonamyesyes30 µg
232413542cephalothinyesyes30 µg
2324127902tetracyclineyesyes30 µg
2324128001vancomycinyesyes30 µg
2324145924trimethoprimyesyes5 µg
232414877ethambutolyesyes50 µg
2324117334penicillinyesyes10 Unit
2324117833gentamicinyesyes10 µg
2324148923erythromycinyesyes2 µg
2324129007ceftriaxoneyesyes30 µg
2324117698chloramphenicolyesyes30 µg
2324150845doxycyclineyesyes30 µg
2324128368novobiocinyesyes30 µg
2324128077rifampicinyesyes30 µg
2324117076streptomycinyesyes30 µg
23241102484sulfisoxazoleyesyes300 µg
232419337sulfathiazoleyesyes300 µg
23241100241ciprofloxacinyesyes5 µg
232413393carbenicillinyesyes100 µg (disc)

metabolite production

  • @ref: 23241
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-testcitrate test
2324115688acetoin-
2324117234glucose-
2324116947citrate-

enzymes

@refvalueactivityec
23241arginine decarboxylase-4.1.1.19
23241arginine dihydrolase-3.5.3.6
23241beta-galactosidase-3.2.1.23
23241catalase+1.11.1.6
23241cytochrome oxidase+1.9.3.1
23241Dnase-
23241gelatinase-
23241lipase-
23241lysine decarboxylase-4.1.1.18
23241ornithine decarboxylase-4.1.1.17
23241phenylalanine deaminase-4.3.1.5
23241phosphatase-
23241tryptophanase-4.1.99.1
23241urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentlatitudelongitude
23241biological soil crustsMay 2003Moab (Colorado Plateau)USAUSANorth America38.5831-109.524
6490biological soil crustsColorado PlateauUSAUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_6538.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_3099;97_3800;98_4826;99_6538&stattab=map
  • Last taxonomy: Belnapia
  • 16S sequence: AJ871428
  • Sequence Identity:
  • Total samples: 3747
  • soil counts: 1857
  • aquatic counts: 584
  • animal counts: 1024
  • plant counts: 282

Safety information

risk assessment

  • @ref: 6490
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Belnapia moabensis partial 16S rRNA gene, type strain CP2CT
  • accession: AJ871428
  • length: 1453
  • database: ena
  • NCBI tax ID: 365533

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Belnapia moabensis DSM 16746GCA_000745835scaffoldncbi1121106
66792Belnapia moabensis DSM 167461121106.3wgspatric1121106
66792Belnapia moabensis DSM 167462571042000draftimg1121106

GC content

  • @ref: 23241
  • GC-content: 75
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno89no
motileyes60.508no
flagellatedno86.08yes
gram-positiveno98.238yes
anaerobicno97.279no
aerobicyes92.853no
halophileno94.495no
spore-formingno91.224no
thermophileno93.314yes
glucose-utilyes87.979yes
glucose-fermentno88.69yes

External links

@ref: 6490

culture collection no.: DSM 16746, ATCC BAA 1043, CIP 109215

straininfo link

  • @ref: 69723
  • straininfo: 289855

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16403866Belnapia moabensis gen. nov., sp. nov., an alphaproteobacterium from biological soil crusts in the Colorado Plateau, USA.Reddy GS, Nagy M, Garcia-Pichel FInt J Syst Evol Microbiol10.1099/ijs.0.63764-02006Alphaproteobacteria/chemistry/*classification/isolation & purification/physiology, Bacterial Proteins/biosynthesis, Base Composition, Catalase/metabolism, Colorado, Fatty Acids, Fermentation, Molecular Sequence Data, Oxidoreductases/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, *Soil Microbiology, Species Specificity, Urease/metabolismMetabolism
Phylogeny21551325Description of Belnapia rosea sp. nov. and emended description of the genus Belnapia Reddy et al. 2006.Jin R, Su J, Liu HY, Wei YZ, Li QP, Zhang YQ, Yu LYInt J Syst Evol Microbiol10.1099/ijs.0.031021-02011Acetobacteraceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Benzoquinones/analysis, China, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Temperature, TreesGenetics
Phylogeny23024144Belnapia soli sp. nov., a proteobacterium isolated from grass soil.Jin L, Lee HG, No KJ, Ko SR, Kim HS, Ahn CY, Oh HMInt J Syst Evol Microbiol10.1099/ijs.0.045302-02012Acetobacteraceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analysisGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6490Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16746)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16746
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23241Gundlapally S. N. Reddy, Moria Nagy, Ferran Garcia-Pichel10.1099/ijs.0.63764-0Belnapia moabensis gen. nov., sp. nov., an alphaproteobacterium from biological soil crusts in the Colorado Plateau, USAIJSEM 56: 51-58 200616403866
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69723Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID289855.1StrainInfo: A central database for resolving microbial strain identifiers