Strain identifier

BacDive ID: 3789

Type strain: Yes

Species: Flavobacterium johnsoniae subsp. aurantiacum

Strain Designation: DWO, Fx a2

Strain history: <- H. Reichenbach, Fx a2 <- ATCC <- R.A. Lewin, DWO

NCBI tax ID(s): 986 (species)

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General

@ref: 2820

BacDive-ID: 3789

DSM-Number: 6792

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen

description: Flavobacterium johnsoniae subsp. aurantiacum DWO is a mesophilic, Gram-negative animal pathogen that was isolated from soil, garden.

NCBI tax id

  • NCBI tax id: 986
  • Matching level: species

strain history

  • @ref: 2820
  • history: <- H. Reichenbach, Fx a2 <- ATCC <- R.A. Lewin, DWO

doi: 10.13145/bacdive3789.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium johnsoniae subsp. aurantiacum
  • full scientific name: Flavobacterium johnsoniae subsp. aurantiacum (Lewin 1969) García-López et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Flexibacter aurantiacus

@ref: 2820

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Cytophagales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium johnsoniae subsp. aurantiacum

full scientific name: Flavobacterium johnsoniae subsp. aurantiacum (Lewin 1969) García-López et al. 2020

strain designation: DWO, Fx a2

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.997

Culture and growth conditions

culture medium

  • @ref: 2820
  • name: CY-AGAR (DSMZ Medium 67)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/67
  • composition: Name: CY-AGAR (DSMZ Medium 67) Composition: Agar 15.0 g/l Casitone 3.0 g/l CaCl2 x 2 H2O 1.36 g/l Yeast extract 1.0 g/l Distilled water

culture temp

  • @ref: 2820
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.994

Isolation, sampling and environmental information

isolation

  • @ref: 2820
  • sample type: soil, garden
  • geographic location: Minnesota, Minneapolis
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Garden
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_4117.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_207;97_2514;98_3111;99_4117&stattab=map
  • Last taxonomy: Flavobacterium johnsoniae subclade
  • 16S sequence: AB681010
  • Sequence Identity:
  • Total samples: 1079
  • soil counts: 358
  • aquatic counts: 268
  • animal counts: 368
  • plant counts: 85

Safety information

risk assessment

  • @ref: 2820
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Flavobacterium johnsoniae strain ATCC 23107 16S ribosomal RNA gene, partial sequenceM627921463ena986
20218Flavobacterium johnsoniae gene for 16S rRNA, strain:IFO 15970AB0780431469ena986
20218Flavobacterium johnsoniae gene for 16S rRNA, partial sequence, strain: NBRC 15970AB6810101439ena986

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium johnsoniae DSM 6792GCA_900129605contigncbi986
66792Flavobacterium johnsoniae strain DSM 6792986.11wgspatric986
66792Flavobacterium johnsoniae DSM 67922695420961draftimg986

GC content

  • @ref: 2820
  • GC-content: 31.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno84.021no
flagellatedno93.89no
gram-positiveno98.453no
anaerobicno99.647no
halophileno96.123no
spore-formingno90.936no
thermophileno99.688yes
glucose-utilyes90.76no
aerobicyes87.39no
glucose-fermentno88.316no

External links

@ref: 2820

culture collection no.: DSM 6792, ATCC 23107, IFO 15970, NBRC 15970

straininfo link

  • @ref: 73301
  • straininfo: 2838

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2820Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6792)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6792
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73301Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2838.1StrainInfo: A central database for resolving microbial strain identifiers