Strain identifier
BacDive ID: 3785
Type strain: 
Species: Flexibacter sp.
Strain history: <- ATCC <- E.R. Squibb Inst. Med. Res., SC 11479
NCBI tax ID(s): 1005 (species)
version 8.1 (current version)
General
@ref: 1299
BacDive-ID: 3785
DSM-Number: 3098
keywords: genome sequence, Bacteria, Gram-negative, antibiotic compound production
description: Flexibacter sp. DSM 3098 is a Gram-negative bacterium that produces antibiotic compounds and was isolated from garden soil.
NCBI tax id
- NCBI tax id: 1005
- Matching level: species
strain history
- @ref: 1299
- history: <- ATCC <- E.R. Squibb Inst. Med. Res., SC 11479
doi: 10.13145/bacdive3785.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Flexibacteraceae
- genus: Flexibacter
- species: Flexibacter sp.
- full scientific name: Flexibacter Soriano 1945 (Approved Lists 1980)
@ref: 1299
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Cytophagaceae
genus: Flexibacter
species: Flexibacter sp.
full scientific name: Flexibacter sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.995
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.985 |
compound production
| @ref | compound |
|---|---|
| 1299 | ß lactam antibiotics (demethoxymonobactams) |
| 1299 | demethoxy monobactams |
Isolation, sampling and environmental information
isolation
- @ref: 1299
- sample type: garden soil
- geographic location: New Jersey, Rocky Hill
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Engineered | #Agriculture | #Garden |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | [Flexibacter] sp. ATCC 35103 | GCA_001975985 | scaffold | ncbi | 1937528 |
| 66792 | [Flexibacter] sp. ATCC 35103 strain ATCC 35103 | 1937528.3 | wgs | patric | 1937528 |
| 66792 | Flavobacterium sp. ATCC 35103 | 2885465677 | draft | img | 1937528 |
GC content
- @ref: 1299
- GC-content: 42.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 93.73 | no |
| gram-positive | no | 98.507 | no |
| anaerobic | no | 99.745 | no |
| aerobic | yes | 91.74 | no |
| halophile | no | 95.73 | no |
| spore-forming | no | 91.654 | no |
| glucose-util | yes | 90.001 | no |
| thermophile | no | 99.616 | no |
| motile | no | 80.378 | no |
| glucose-ferment | no | 87.737 | no |
External links
@ref: 1299
culture collection no.: DSM 3098, ATCC 35103, SC 11479
straininfo link
- @ref: 73297
- straininfo: 45973
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1299 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3098) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3098 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 73297 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45973.1 | StrainInfo: A central database for resolving microbial strain identifiers |