General

@ref: 16577

BacDive-ID: 3761

DSM-Number: 22860

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Anaeromyxobacter dehalogenans FRC-D1 is an anaerobe, mesophilic bacterium that was isolated from sediment cores taken from an uranium-contaminated groundwater environment.

NCBI tax id

• NCBI tax id: 161493
• Matching level: species

strain history

• @ref: 16577
• history: <- F. E. Löffler, Georgia Inst. Technology, School of Civil and Environmental Engineering, Atlanta, USA; FRC-D1 <- S. H. Thomas

doi: 10.13145/bacdive3761.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Deltaproteobacteria
• order: Myxococcales
• family: Anaeromyxobacteraceae
• genus: Anaeromyxobacter
• species: Anaeromyxobacter dehalogenans
• full scientific name: Anaeromyxobacter dehalogenans Sanford et al. 2002

@ref: 16577

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Anaeromyxobacteraceae

genus: Anaeromyxobacter

species: Anaeromyxobacter dehalogenans

full scientific name: Anaeromyxobacter dehalogenans Sanford et al. 2002

strain designation: FRC-D1

type strain: no

Morphology

multimedia

• @ref: 16577
• multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_22860.jpg
• intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

• @ref: 16577
• name: ANAEROMYXOBACTER-MEDIUM (DSMZ Medium 1200)
• growth: yes
• link: https://mediadive.dsmz.de/medium/1200
• composition: Name: ANAEROMYXOBACTER-MEDIUM (DSMZ Medium 1200) Composition: NaHCO3 4.54545 g/l NaCl 1.00563 g/l MgCl2 x 6 H2O 0.502815 g/l Na-acetate 0.402253 g/l Disodium fumarate 0.363636 g/l NH4Cl 0.301689 g/l KCl 0.301689 g/l KH2PO4 0.201126 g/l DL-Dithiothreitol 0.14 g/l CaCl2 x 2 H2O 0.0150845 g/l Na2S x H2O 0.0145455 g/l L-Cysteine 0.0136364 g/l HCl 0.00193584 g/l FeSO4 x 7 H2O 0.00149648 g/l NaOH 0.00100563 g/l H3BO3 0.000299295 g/l CoCl2 x 6 H2O 0.000189553 g/l Pyridoxine hydrochloride 0.000181818 g/l MnCl2 x 4 H2O 9.97651e-05 g/l Nicotinic acid 9.09091e-05 g/l D-Calcium pantothenate 9.09091e-05 g/l p-Aminobenzoic acid 9.09091e-05 g/l Lipoic acid 9.09091e-05 g/l Thiamine-HCl x 2 H2O 9.09091e-05 g/l Riboflavin 9.09091e-05 g/l ZnCl2 6.98355e-05 g/l Biotin 3.63636e-05 g/l Folic acid 3.63636e-05 g/l Na2MoO4 x 2 H2O 3.59154e-05 g/l NiCl2 x 6 H2O 2.39436e-05 g/l Na2WO4 x 2 H2O 8.04505e-06 g/l Na2SeO3 x 5 H2O 6.03379e-06 g/l CuCl2 x 2 H2O 1.9953e-06 g/l Vitamin B12 1.81818e-06 g/l Resazurin Distilled water

culture temp

• @ref: 16577
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Physiology and metabolism

oxygen tolerance

• @ref: 16577
• oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

• @ref: 16577
• sample type: sediment cores taken from an uranium-contaminated groundwater environment
• geographic location: Tennessee, Oak Ridge
• country: USA
• origin.country: USA
• continent: North America

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_3121.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_371;96_1627;97_1947;98_2395;99_3121&stattab=map
• Last taxonomy: Anaeromyxobacter
• 16S sequence: FJ190048
• Sequence Identity:
• Total samples: 10224
• soil counts: 6429
• aquatic counts: 2438
• animal counts: 420
• plant counts: 937

Safety information

risk assessment

• @ref: 16577
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 16577
• description: Anaeromyxobacter dehalogenans strain FRC-D1 16S ribosomal RNA gene, partial sequence
• accession: FJ190048
• length: 1463
• database: ena
• NCBI tax ID: 161493

External links

@ref: 16577

culture collection no.: DSM 22860

straininfo link

• @ref: 73273
• straininfo: 405177

literature

• topic: Phylogeny
• Pubmed-ID: 19346346
• title: Diversity and distribution of anaeromyxobacter strains in a uranium-contaminated subsurface environment with a nonuniform groundwater flow.
• authors: Thomas SH, Padilla-Crespo E, Jardine PM, Sanford RA, Loffler FE
• journal: Appl Environ Microbiol
• DOI: 10.1128/AEM.02473-08
• year: 2009
• mesh: Cluster Analysis, Colony Count, Microbial, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Genetic Variation, Molecular Sequence Data, Myxococcales/*classification/genetics/*isolation & purification, Phylogeny, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Soil Pollutants, Radioactive/*metabolism, United States, Uranium/*metabolism
• topic2: Genetics

Reference