Strain identifier

BacDive ID: 376

Type strain: Yes

Species: Bordetella bronchiseptica

Strain history: CIP <- 1955, Lab. Ident. Inst. Pasteur, Paris, France <- S. Rubinsten, Inst. Lister, London, UK: strain 452

NCBI tax ID(s): 518 (species)

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General

@ref: 5042

BacDive-ID: 376

DSM-Number: 13414

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, human pathogen

description: Bordetella bronchiseptica DSM 13414 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from dog lung.

NCBI tax id

  • NCBI tax id: 518
  • Matching level: species

strain history

@refhistory
5042<- CCUG <- NCTC <- N. S. Ferry
117057CIP <- 1955, Lab. Ident. Inst. Pasteur, Paris, France <- S. Rubinsten, Inst. Lister, London, UK: strain 452

doi: 10.13145/bacdive376.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella bronchiseptica
  • full scientific name: Bordetella bronchiseptica (Ferry 1912) Moreno-López 1952 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus bronchisepticus

@ref: 5042

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella bronchiseptica

full scientific name: Bordetella bronchiseptica (Ferry 1912) Moreno-López 1952

type strain: yes

Morphology

cell morphology

  • @ref: 117057
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

colony morphology

@reftype of hemolysishemolysis ability
5042gamma
1170571

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5042COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5042CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
38384MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
117057CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
117057CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
5042positivegrowth37mesophilic
38384positivegrowth30mesophilic
44141positivegrowth37mesophilic
117057positivegrowth10-41
117057nogrowth5psychrophilic
117057nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
44141aerobe
117057obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
117057NaClpositivegrowth0-4 %
117057NaClnogrowth6 %
117057NaClnogrowth8 %
117057NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
11705716947citrate+carbon source
1170574853esculin-hydrolysis
117057606565hippurate+hydrolysis
11705717632nitrate-builds gas from
11705717632nitrate-reduction
11705716301nitrite-builds gas from
11705716301nitrite-reduction
11705715792malonate-assimilation
11705717234glucose-degradation
11705717632nitrate-respiration
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea+hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan-energy source
6837417634D-glucose-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose-builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 117057
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6837435581indoleno
6836935581indoleno
11705735581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837735581indole-
6837435581indole-
6836935581indole-
11705715688acetoin-
11705717234glucose-

enzymes

@refvalueactivityec
5042catalase+1.11.1.6
5042cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase-3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease+3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
117057oxidase+
117057beta-galactosidase-3.2.1.23
117057alcohol dehydrogenase-1.1.1.1
117057gelatinase-
117057amylase-
117057DNase-
117057caseinase-3.4.21.50
117057catalase+1.11.1.6
117057tween esterase-
117057gamma-glutamyltransferase+2.3.2.2
117057lecithinase-
117057lipase-
117057lysine decarboxylase-4.1.1.18
117057ornithine decarboxylase-4.1.1.17
117057phenylalanine ammonia-lyase-4.3.1.24
117057protease-
117057tryptophan deaminase-
117057urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117057--+--+----+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
5042----+----------++/-+/-+++
5042----+----------+++/-+++
5042----+----------++++++

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
44141---+----+-----------------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
5042++++-+----+--
5042+/-----+-+-----
5042-+/-----+-+----
5042-++++-+----+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117057------------------------------------------------+-+-------+--+-----------+-+++-+-+-----++++++++-+++

Isolation, sampling and environmental information

isolation

@refsample typesampling date
5042dog lung
44141Dog lung1912
117057Animal, Dog, lung with distemper

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Oral cavity and airways#Lung

taxonmaps

  • @ref: 69479
  • File name: preview.99_12.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_11;99_12&stattab=map
  • Last taxonomy: Bordetella pertussis
  • 16S sequence: U04948
  • Sequence Identity:
  • Total samples: 23163
  • soil counts: 4730
  • aquatic counts: 9586
  • animal counts: 5464
  • plant counts: 3383

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
5042yesyes2Risk group (German classification)
1170572Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bordetella bronchiseptica gene for 16S rRNA, partial sequence, strain: NBRC 13691AB6804791456ena518
5042Bordetella bronchiseptica ATCC 19395 16S rRNA, partial sequenceU049481464ena518

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bordetella bronchiseptica strain NCTC452518.61wgspatric518
66792Bordetella bronchiseptica CCUG 219GCA_021391275scaffoldncbi518
66792Bordetella bronchiseptica NCTC452GCA_900445725contigncbi518

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno97.906no
anaerobicno99.028yes
halophileno84.684no
spore-formingno94.012no
glucose-utilno79.929yes
aerobicyes87.556yes
thermophileno99.509yes
motileyes88.849no
flagellatedno50no
glucose-fermentno90.682yes

External links

@ref: 5042

culture collection no.: DSM 13414, ATCC 19395, CCUG 219, CIP 55.110, LMG 1232, NCTC 452, CCM 6082

straininfo link

  • @ref: 70056
  • straininfo: 1283

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology18670923Characterization of the proteins of Bordetella isolates from turkeys in the UK by polyacrylamide gel electrophoresis.Varley J, Carter SDAvian Pathol10.1080/030794592084188261992
18766500The characterisation of Bordetella/Alcaligenes-like organisms and their effects on turkey poults and chicks.Varley JAvian Pathol10.1080/030794586084362621986
Phylogeny27902262Saccharedens versatilis gen. nov., sp. nov., a sugar-degrading member of the Burkholderiales isolated from Cephalotes rohweri ant guts.Lin JY, Hobson WJ, Wertz JTInt J Syst Evol Microbiol10.1099/ijsem.0.0016502017Alcaligenaceae/*classification/genetics/isolation & purification, Animals, Ants/*microbiology, Arizona, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Symbiosis, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5042Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13414)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13414
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38384Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8544
44141Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 219)https://www.ccug.se/strain?id=219
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68374Automatically annotated from API ID32E
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70056Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1283.1StrainInfo: A central database for resolving microbial strain identifiers
117057Curators of the CIPCollection of Institut Pasteur (CIP 55.110)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2055.110