Strain identifier

BacDive ID: 371

Type strain: No

Species: Bordetella pertussis

Strain history: <- M. Walker

NCBI tax ID(s): 520 (species)

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General

@ref: 1878

BacDive-ID: 371

DSM-Number: 4925

keywords: 16S sequence, Bacteria, mesophilic

description: Bordetella pertussis DSM 4925 is a mesophilic bacterium of the family Alcaligenaceae.

NCBI tax id

  • NCBI tax id: 520
  • Matching level: species

strain history

  • @ref: 1878
  • history: <- M. Walker

doi: 10.13145/bacdive371.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella pertussis
  • full scientific name: Bordetella pertussis (Bergey et al. 1923) Moreno-López 1952 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Hemophilus pertussis

@ref: 1878

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella pertussis

full scientific name: Bordetella pertussis (Bergey et al. 1923) Moreno-López 1952

type strain: no

Morphology

colony morphology

  • @ref: 1878
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 1878
  • name: BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/438
  • composition: Name: BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438) Composition: Horse blood 150.0 g/l Bordet-Gengou-Agar-Base

culture temp

  • @ref: 1878
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6836935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6837735581indole-
6836935581indole-

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
1878------------------+-+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
1878----------+--
1878----------+--
1878-----------+-
1878-----------+-

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_12.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_11;99_12&stattab=map
  • Last taxonomy: Bordetella pertussis
  • 16S sequence: HE965805
  • Sequence Identity:
  • Total samples: 23163
  • soil counts: 4730
  • aquatic counts: 9586
  • animal counts: 5464
  • plant counts: 3383

Safety information

risk assessment

  • @ref: 1878
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1878
  • description: Bordetella pertussis 18323 complete genome
  • accession: HE965805
  • length: 4043846
  • database: ena
  • NCBI tax ID: 568706

GC content

  • @ref: 1878
  • GC-content: 61.0

External links

@ref: 1878

culture collection no.: DSM 4925

straininfo link

  • @ref: 70051
  • straininfo: 47885

Reference

@idauthorscataloguedoi/urltitle
1878Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4925)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4925
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70051Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47885.1StrainInfo: A central database for resolving microbial strain identifiers