Strain identifier
BacDive ID: 36
Type strain: 
Species: Asaia platycodi
Strain Designation: T-683
Strain history: TUA 1328B <-- T. Uchimura T-683.
NCBI tax ID(s): 1236525 (strain), 610243 (species)
version 9.1 (current version)
General
@ref: 16659
BacDive-ID: 36
DSM-Number: 23029
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Asaia platycodi T-683 is a Gram-negative bacterium that was isolated from balloon flower Platycodon grandiflorum.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1236525 | strain |
| 610243 | species |
strain history
| @ref | history |
|---|---|
| 16659 | <- T. Uchimura, Dept. Applied Biology and Chemistry, Tokyo Univ. Agriculture, Setagaya-ku, Japan; T-683 <- R. Suzuki |
| 67770 | TUA 1328B <-- T. Uchimura T-683. |
doi: 10.13145/bacdive36.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Asaia
- species: Asaia platycodi
- full scientific name: Asaia platycodi Suzuki et al. 2012
@ref: 16659
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Asaia
species: Asaia platycodi
full scientific name: Asaia platycodi Suzuki et al. 2012
strain designation: T-683
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 16659
- name: ASAIA GYP MEDIUM (DSMZ Medium 1330)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1330
- composition: Name: ASAIA GYP MEDIUM (DSMZ Medium 1330) Composition: Agar 15.0 g/l Peptone 10.0 g/l Glycerol 10.0 g/l Glucose 10.0 g/l CaCO3 7.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 16659 | positive | growth | 28 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 92.896 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 16659 | balloon flower Platycodon grandiflorum | Platycodon grandiflorum | Akita | Japan | JPN | Asia |
| 67770 | Balloon flower (Platycodon grandiflorum) | Platycodon grandiflorum | Akita | Japan | JPN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_4348.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_661;97_765;98_3270;99_4348&stattab=map
- Last taxonomy: Asaia
- 16S sequence: AB485739
- Sequence Identity:
- Total samples: 21825
- soil counts: 6137
- aquatic counts: 4167
- animal counts: 6615
- plant counts: 4906
Safety information
risk assessment
- @ref: 16659
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16659
- description: Asaia platycodi gene for 16S rRNA, partial sequence, strain: T-683
- accession: AB485739
- length: 1434
- database: nuccore
- NCBI tax ID: 1236525
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Asaia platycodi JCM 25414 | 1236525.5 | wgs | patric | 1236525 |
| 66792 | Asaia platycodi JCM 25414 | 2585427932 | draft | img | 1236525 |
| 67770 | Asaia platycodi JCM 25414 | GCA_000614545 | contig | ncbi | 1236525 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 16659 | 60.0 | high performance liquid chromatography (HPLC) |
| 67770 | 60 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.701 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 92.896 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.979 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.691 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 62.296 | no |
External links
@ref: 16659
culture collection no.: DSM 23029, JCM 25414
straininfo link
- @ref: 69721
- straininfo: 404601
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16659 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23029) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23029 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 69721 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404601.1 | StrainInfo: A central database for resolving microbial strain identifiers |