Strain identifier

BacDive ID: 355

Type strain: Yes

Species: Oligella urethralis

Strain Designation: MC213, MC 213

Strain history: CIP <- 1988, LMG: strain 1015, Moraxella urethralis <- 1967, Torry Res. Stat., Mima polymorpha var. oxidans <- ATCC <- CDC: strain 7603 <- Washington State Board Hlth., USA: strain MC 213

NCBI tax ID(s): 1122620 (strain), 90245 (species)

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General

@ref: 3204

BacDive-ID: 355

DSM-Number: 7531

keywords: genome sequence, 16S sequence, Bacteria, aerobe, chemoorganotroph, mesophilic, Gram-negative, rod-shaped, human pathogen

description: Oligella urethralis MC213 is an aerobe, chemoorganotroph, mesophilic human pathogen that was isolated from human ear.

NCBI tax id

NCBI tax idMatching level
90245species
1122620strain

strain history

@refhistory
3204<- ATCC <- CDC, 7603 <- Washington State Board of Health, MC213
67770IAM 13553 <-- ATCC 17960 <-- CDC 7603 ("Mima polymymorpha var. oxidans") <-- Washington State Board of Health, USA; MC213.
123749CIP <- 1988, LMG: strain 1015, Moraxella urethralis <- 1967, Torry Res. Stat., Mima polymorpha var. oxidans <- ATCC <- CDC: strain 7603 <- Washington State Board Hlth., USA: strain MC 213

doi: 10.13145/bacdive355.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Oligella
  • species: Oligella urethralis
  • full scientific name: Oligella urethralis (Lautrop et al. 1970) Rossau et al. 1987

  • synonyms

    • @ref: 20215
    • synonym: Moraxella urethralis

@ref: 3204

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Oligella

species: Oligella urethralis

full scientific name: Oligella urethralis (Lautrop et al. 1970) Rossau et al. 1987

strain designation: MC213, MC 213

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotilityconfidence
23272negative1 µmrod-shapedno
69480negative99.995

colony morphology

  • @ref: 23272
  • type of hemolysis: gamma

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3204BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
23272Nutrient agar (NA)yes
38118MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
123749CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
123749CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3204positivegrowth37mesophilic
23272positivegrowth42thermophilic
23272positivegrowth30-37mesophilic
38118positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 23272
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 23272
  • type: chemoorganotroph

spore formation

@refspore formationconfidence
23272no
69481no100
69480no99.989

halophily

  • @ref: 23272
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2327215963ribitol-builds acid from
2327215824D-fructose-builds acid from
2327217634D-glucose-builds acid from
2327265327D-xylose-builds acid from
2327217306maltose-builds acid from
2327232382(R)-mandelate-carbon source
23272165672-aminobenzoate-carbon source
23272168082-dehydro-D-gluconate-carbon source
23272307613-aminobenzoate-carbon source
23272879973-aminobutyrate-carbon source
23272178364-aminobenzoate-carbon source
23272391504-oxopentanoate-carbon source
23272174265-dehydro-D-gluconate-carbon source
2327227856acetamide-carbon source
2327222210aconitate-carbon source
2327217128adipate-carbon source
2327215963ribitol-carbon source
2327227613amygdalin-carbon source
2327218305arbutin-carbon source
2327278208azelaate-carbon source
2327240538benzylamine-carbon source
2327216958beta-alanine-carbon source
2327217750betaine-carbon source
2327243799butan-1-amine-carbon source
2327227689decanoate-carbon source
2327225646octanoate-carbon source
2327217057cellobiose-carbon source
2327230719citraconate-carbon source
2327216919creatine-carbon source
2327217108D-arabinose-carbon source
2327218333D-arabitol-carbon source
2327215824D-fructose-carbon source
2327228847D-fucose-carbon source
2327212936D-galactose-carbon source
232728391D-gluconate-carbon source
2327217315D-glucosamine-carbon source
2327217634D-glucose-carbon source
2327262318D-lyxose-carbon source
2327216899D-mannitol-carbon source
2327216024D-mannose-carbon source
2327216988D-ribose-carbon source
2327216443D-tagatose-carbon source
2327230927D-tartrate-carbon source
2327216296D-tryptophan-carbon source
2327265327D-xylose-carbon source
2327233871glycerate-carbon source
2327216813galactitol-carbon source
2327217113erythritol-carbon source
232724853esculin-carbon source
2327216000ethanolamine-carbon source
2327215862ethylamine-carbon source
2327228066gentiobiose-carbon source
2327215428glycine-carbon source
2327228087glycogen-carbon source
2327229805glycolate-carbon source
2327232362heptanoate-carbon source
2327218295histamine-carbon source
2327215443inulin-carbon source
2327230803isophthalate-carbon source
2327228683kynurenine-carbon source
2327230849L-arabinose-carbon source
2327218403L-arabitol-carbon source
2327216467L-arginine-carbon source
2327216349L-citrulline-carbon source
2327217561L-cysteine-carbon source
2327218287L-fucose-carbon source
2327215971L-histidine-carbon source
2327218019L-lysine-carbon source
2327216643L-methionine-carbon source
2327215729L-ornithine-carbon source
2327217295L-phenylalanine-carbon source
2327262345L-rhamnose-carbon source
2327217115L-serine-carbon source
2327217266L-sorbose-carbon source
2327216857L-threonine-carbon source
2327216828L-tryptophan-carbon source
2327217895L-tyrosine-carbon source
2327265328L-xylose-carbon source
2327217716lactose-carbon source
2327218300maleic acid-carbon source
2327215792malonate-carbon source
2327217306maltose-carbon source
232726731melezitose-carbon source
2327228053melibiose-carbon source
2327230928meso-tartrate-carbon source
23272320061methyl alpha-D-glucopyranoside-carbon source
2327243943methyl alpha-D-mannoside-carbon source
2327274863methyl beta-D-xylopyranoside-carbon source
23272506227N-acetylglucosamine-carbon source
2327232361nonanoate-carbon source
2327230623oxalate-carbon source
2327274848pentan-1-amine-carbon source
2327217563phthalate-carbon source
2327217774pimelate-carbon source
2327217148putrescine-carbon source
2327216634raffinose-carbon source
2327217814salicin-carbon source
2327215611sarcosine-carbon source
2327241865sebacic acid-carbon source
2327230911sorbitol-carbon source
2327215746spermine-carbon source
2327228017starch-carbon source
232729300suberic acid-carbon source
2327217992sucrose-carbon source
2327230043terephthalate-carbon source
2327227082trehalose-carbon source
2327216765tryptamine-carbon source
2327232528turanose-carbon source
2327216199urea-carbon source
2327217151xylitol-carbon source
2327232800(S)-mandelic acid-growth
23272283402-aminobutyrate-growth
23272194752-aminopentanoic acid-growth
23272161933-hydroxybenzoate-growth
2327216865gamma-aminobutyric acid-growth
23272178794-hydroxybenzoate-growth
232723565cetrimide-growth
2327229991L-aspartate-growth
2327230924L-tartrate-growth
2327236986mesaconate-growth
2327218401phenylacetate-growth
2327218123trigonelline-growth
2327227856acetamide-hydrolysis
2327216991dna-hydrolysis
232724853esculin-hydrolysis
232725291gelatin-hydrolysis
2327228017starch-hydrolysis
2327253426tween 80-hydrolysis
2327217632nitrate-reduction
2327215589L-malate+carbon source
23272309162-oxoglutarate+carbon source
23272370543-hydroxybutyrate+carbon source
2327230089acetate+carbon source
2327216150benzoate+carbon source
2327229806fumarate+carbon source
2327229985L-glutamate+carbon source
2327224996lactate+carbon source
2327215361pyruvate+carbon source
2327230031succinate+carbon source
23272158875-aminovaleric acid+growth
2327216947citrate+growth
2327215570D-alanine+growth
2327215588D-malate+growth
2327217859glutaric acid+growth
2327248944isobutyrate+growth
2327248942isovalerate+growth
2327217240itaconate+growth
2327216977L-alanine+growth
2327217191L-isoleucine+growth
2327215603L-leucine+growth
2327218347L-norleucine+growth
2327217203L-proline+growth
2327216414L-valine+growth
2327217272propionate+growth
2327231011valerate+growth
2327216301nitrite+reduction
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
6837316199urea-hydrolysis
6837317632nitrate-reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837317634D-glucose-assimilation
6837330031succinate+assimilation
6837330089acetate+assimilation
6837317272propionate+assimilation
6837325115malate+assimilation
6837316947citrate-assimilation
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
2327217334penicillinyesyes
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

@refChebi-IDmetaboliteproduction
2327235581indoleno
2327216136hydrogen sulfideno
6837316136hydrogen sulfideno
6836935581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836935581indole-

enzymes

@refvalueactivityec
23272Acid phosphatase-3.1.3.2
23272Alkaline phosphatase-3.1.3.1
23272alpha-chymotrypsin-3.4.21.1
23272alpha-fucosidase-3.2.1.51
23272alpha-galactosidase-3.2.1.22
23272alpha-glucosidase-3.2.1.20
23272alpha-mannosidase-3.2.1.24
23272arginine dihydrolase-3.5.3.6
23272beta-galactosidase-3.2.1.23
23272beta-glucoronidase-3.2.1.31
23272beta-glucosidase-3.2.1.21
23272cystine arylamidase-3.4.11.3
23272cytochrome oxidase+1.9.3.1
23272esterase (C 4)+
23272esterase lipase (C 8)+
23272leucine arylamidase+3.4.11.1
23272lipase (C 14)-
23272lysine decarboxylase-4.1.1.18
23272N-acetyl-beta-glucosaminidase-3.2.1.52
23272naphthol-AS-BI-phosphohydrolase-
23272ornithine decarboxylase-4.1.1.17
23272trypsin-3.4.21.4
23272urease-3.5.1.5
23272valine arylamidase-
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68377gamma-glutamyltransferase+2.3.2.2
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68373catalase+1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase+3.4.11.21
68373L-arginine arylamidase+
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase+2.3.2.2
68373esterase+
68373urease-3.5.1.5
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
65625--+--+--------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
65625-----------------+--+

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
65625--+-++-+++--+--+++--+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
65625-----------+-
3204----------++-
3204-----------++

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
65625-----------------+---+--+----

Isolation, sampling and environmental information

isolation

@refsample type
3204human ear
67770Ear
123749Human, Ear

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Organ#Ear

taxonmaps

  • @ref: 69479
  • File name: preview.99_3317.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_1726;97_2067;98_2542;99_3317&stattab=map
  • Last taxonomy: Oligella urethralis subclade
  • 16S sequence: AJ251911
  • Sequence Identity:
  • Total samples: 9454
  • soil counts: 601
  • aquatic counts: 1011
  • animal counts: 7657
  • plant counts: 185

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
3204yes, in single casesyes, in single cases1Risk group (German classification)
1237491Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Oligella urethralis 16S ribosomal RNA gene, partial sequenceAF2271631458ena90245
20218Oligella urethralis strain CIP 103116 16S ribosomal RNA gene, partial sequenceAF1335381486ena90245
20218Oligella urethralis 16S rRNA gene, partialAJ247262457ena90245
20218Oligella urethralis 16S rRNA gene, strain LMG 1015AJ2519111489ena90245

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Oligella urethralis DSM 75311122620.3wgspatric1122620
66792Oligella urethralis strain NCTC1296490245.9wgspatric90245
66792Oligella urethralis DSM 75312515154022draftimg1122620
66792Oligella urethralis NCTC 129642839505685draftimg90245
67770Oligella urethralis DSM 7531GCA_000372065contigncbi1122620
67770Oligella urethralis NCTC12964GCA_900454345contigncbi90245

GC content

@refGC-contentmethod
320447.7
320447.5
2327246-47.5thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno81.161no
flagellatedno94.028yes
gram-positiveno98.358yes
anaerobicno96.583no
aerobicyes51.943yes
halophileno75.876no
spore-formingno96.303no
glucose-utilno90.198yes
thermophileno95.817no
glucose-fermentno90.699yes

External links

@ref: 3204

culture collection no.: DSM 7531, ATCC 17960, CCUG 13463, LMG 5303, CDC 7603, JCM 20913, CCUG 37823, CIP 103116, IAM 13553, IFO 14589, LMG 1015, NBRC 14589, NCTC 12964, NCTC 744, USCC 1441

straininfo link

  • @ref: 70035
  • straininfo: 3735

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3204Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7531)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7531
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23272R. Rossau, K. Kersters, E. Falsen, E. Jantzen, P. Segers, A. Union, L. Nehls, J. De Ley10.1099/00207713-37-3-198Oligella, a New Genus Including Oligella urethralis comb. nov. (Formerly Moraxella urethralis) and Oligella ureolytica sp. nov. (Formerly CDC Group IVe): Relationship to Taylorella equigenitalis and Related TaxaIJSEM 37: 198-210 1987
38118Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14878
65625Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 13463)https://www.ccug.se/strain?id=13463
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68373Automatically annotated from API CAM
68377Automatically annotated from API NH
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70035Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3735.1StrainInfo: A central database for resolving microbial strain identifiers
123749Curators of the CIPCollection of Institut Pasteur (CIP 103116)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103116