Strain identifier
BacDive ID: 3510
Type strain: 
Species: Archangium sp.
Strain Designation: Cb g35
Strain history: <- H. Reichenbach, GBF; Cystobacter gracilis Cb g35
NCBI tax ID(s): 1872627 (species)
version 8.1 (current version)
General
@ref: 14407
BacDive-ID: 3510
DSM-Number: 52696
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Archangium sp. Cb g35 is a mesophilic, Gram-negative bacterium that builds a fruiting body and was isolated from bark from big tree.
NCBI tax id
- NCBI tax id: 1872627
- Matching level: species
strain history
- @ref: 14407
- history: <- H. Reichenbach, GBF; Cystobacter gracilis Cb g35
doi: 10.13145/bacdive3510.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Archangiaceae
- genus: Archangium
- species: Archangium sp.
- full scientific name: Archangium Jahn 1924 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Angiococcus
@ref: 14407
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Archangiaceae
genus: Archangium
species: Archangium sp.
full scientific name: Archangium sp.
strain designation: Cb g35
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.914
multicellular morphology
- @ref: 18281
- forms multicellular complex: yes
- complex name: fruiting body
Culture and growth conditions
culture medium
- @ref: 14407
- name: VY/2 AGAR (DSMZ Medium 9)
- growth: yes
- link: https://mediadive.dsmz.de/medium/9
- composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
culture temp
- @ref: 14407
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.805
compound production
- @ref: 14407
- compound: roimatacene
Isolation, sampling and environmental information
isolation
- @ref: 14407
- sample type: bark from big tree
- geographic location: Bangalore, Karnataka
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Bark |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Archangium sp. Cb G35 | 1920190.3 | wgs | patric | 1920190 |
| 66792 | Archangium sp. Cb G35 | GCA_001896145 | contig | ncbi | 1920190 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 65 | no |
| motile | no | 61.63 | no |
| gram-positive | no | 96.117 | no |
| anaerobic | no | 97.391 | no |
| aerobic | yes | 76.924 | no |
| halophile | no | 88.885 | no |
| spore-forming | no | 75.692 | no |
| glucose-util | yes | 81.809 | no |
| flagellated | no | 87.808 | no |
| thermophile | no | 99.148 | yes |
| glucose-ferment | no | 89.361 | no |
External links
@ref: 14407
culture collection no.: DSM 52696
straininfo link
- @ref: 73023
- straininfo: 216132
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 14407 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 52696) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-52696 | |
| 18281 | Reichenbach, H. | Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ | ||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 73023 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID216132.1 | StrainInfo: A central database for resolving microbial strain identifiers |