Strain identifier
BacDive ID: 3339
Type strain: 
Species: Cystobacter ferrugineus
Strain Designation: Cb fe18
Strain history: DSM 14716 <-- H. Reichenbach Cb fe18.
NCBI tax ID(s): 83449 (species)
version 8.1 (current version)
General
@ref: 5501
BacDive-ID: 3339
DSM-Number: 14716
keywords: 16S sequence, Bacteria, mesophilic
description: Cystobacter ferrugineus Cb fe18 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 83449
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5501 | <- H. Reichenbach; Cb fe18 |
| 67770 | DSM 14716 <-- H. Reichenbach Cb fe18. |
doi: 10.13145/bacdive3339.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Archangiaceae
- genus: Cystobacter
- species: Cystobacter ferrugineus
- full scientific name: Cystobacter ferrugineus (Krzemieniewska and Krzemieniewski 1927) McCurdy 1970 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Polyangium ferrugineum
@ref: 5501
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Archangiaceae
genus: Cystobacter
species: Cystobacter ferrugineus
full scientific name: Cystobacter ferrugineus (Krzemieniewska and Krzemieniewski 1927) McCurdy 1970
strain designation: Cb fe18
type strain: yes
Morphology
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 5501 | https://www.dsmz.de/microorganisms/photos/DSM_14716_plate.jpg | plate | © Leibniz-Institut DSMZ |
| 5501 | https://www.dsmz.de/microorganisms/photos/DSM_14716.jpg | sporangioles on agar medium 9 | © Leibniz-Institut DSMZ |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5501 | AGAR WITH E. COLI AS FEED (DSMZ Medium 942) | yes | https://mediadive.dsmz.de/medium/942 | Name: AGAR WITH E. COLI AS FEED (DSMZ Medium 942) Composition: Agar 15.0 g/l CaCl2 x 2 H2O 1.0 g/l Distilled water |
| 5501 | VY/2 AGAR (DSMZ Medium 9) | yes | https://mediadive.dsmz.de/medium/9 | Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5501 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 5501 | soil | Greece | GRC | Europe |
| 67770 | Soil | Greece | GRC | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_1427.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_958;98_1127;99_1427&stattab=map
- Last taxonomy: Cystobacter
- 16S sequence: NR_025343
- Sequence Identity:
- Total samples: 13071
- soil counts: 8866
- aquatic counts: 647
- animal counts: 1003
- plant counts: 2555
Safety information
risk assessment
- @ref: 5501
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 5501 | Cystobacter ferrugineus 16S rRNA gene, strain Cb fe18 | AJ233901 | 1517 | ena | 83449 |
| 5501 | Cystobacter ferrugineus strain DSM 14716 16S ribosomal RNA gene, partial sequence | DQ768112 | 1491 | ena | 83449 |
| 5501 | Cystobacter ferrugineus strain Cb fe18 16S ribosomal RNA, partial sequence | NR_025343 | 1517 | nuccore | 83449 |
External links
@ref: 5501
culture collection no.: DSM 14716, JCM 12624
straininfo link
- @ref: 72852
- straininfo: 215423
literature
- topic: Phylogeny
- Pubmed-ID: 24187023
- title: Designation of type strains for seven species of the order Myxococcales and proposal for neotype strains of Cystobacter ferrugineus, Cystobacter minus and Polyangium fumosum.
- authors: Lang E, Reichenbach H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.056440-0
- year: 2013
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Myxococcales/*classification/cytology/genetics, *Phylogeny, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5501 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14716) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14716 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72852 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID215423.1 | StrainInfo: A central database for resolving microbial strain identifiers |