Archive BacDiveID:10.13145/bacdive3252.20240510.9

Strain identifier

BacDive ID: 3252

Type strain:

Species: Archangium gephyra

Strain Designation: Ar g1

Strain history: <- H. Reichenbach, GBF; Ar g1

NCBI tax ID(s): 48 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 14280

BacDive-ID: 3252

DSM-Number: 52589

keywords: 16S sequence, Bacteria

description: Archangium gephyra Ar g1 is a bacterium that was isolated from soil with raw humus, leaves and twiggs.

NCBI tax id

NCBI tax id: 48
Matching level: species

strain history

@ref: 14280
history: <- H. Reichenbach, GBF; Ar g1

doi: 10.13145/bacdive3252.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Myxococcales
family: Archangiaceae
genus: Archangium
species: Archangium gephyra
full scientific name: Archangium gephyra Jahn 1924 (Approved Lists 1980)

@ref: 14280

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Archangiaceae

genus: Archangium

species: Archangium gephyra

full scientific name: Archangium gephyra Jahn 1924 emend. Lang et al. 2015

strain designation: Ar g1

type strain: no

Culture and growth conditions

culture medium

@ref: 14280
name: VY/2 AGAR (DSMZ Medium 9)
growth: yes
link: https://mediadive.dsmz.de/medium/9
composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water

culture temp

@ref: 14280
growth: positive
type: growth
temperature: 28

Isolation, sampling and environmental information

isolation

@ref: 14280
sample type: soil with raw humus, leaves and twiggs
geographic location: Oranje State
country: South Africa
origin.country: ZAF
continent: Africa

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host Body-Site	#Plant	#Leaf (Phyllosphere)
#Host Body-Site	#Plant	#Stem (Branch)

taxonmaps

@ref: 69479
File name: preview.99_4267.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_958;98_3213;99_4267&stattab=map
Last taxonomy: Archangium
16S sequence: AJ233912
Sequence Identity:
Total samples: 1011
soil counts: 747
aquatic counts: 113
animal counts: 56
plant counts: 95

Safety information

risk assessment

@ref: 14280
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 14280
description: Archangium gephyra (strain Ar g1) 16S rRNA gene
accession: AJ233912
length: 1518
database: nuccore
NCBI tax ID: 48

External links

@ref: 14280

culture collection no.: DSM 52589

straininfo link

@ref: 72765
straininfo: 215913

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
14280	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 52589)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-52589
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
72765	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID215913.1	StrainInfo: A central database for resolving microbial strain identifiers