Strain identifier
BacDive ID: 3236
Type strain: 
Species: Corynebacterium mustelae
Strain Designation: 3105
Strain history: CCUG 57279 <-- G. Funke 3105.
NCBI tax ID(s): 571915 (species)
version 8.1 (current version)
General
@ref: 16079
BacDive-ID: 3236
DSM-Number: 45274
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped, animal pathogen
description: Corynebacterium mustelae 3105 is a facultative anaerobe, mesophilic, Gram-positive animal pathogen that was isolated from necropsy lung tissue of a ferret with lethal sepsis.
NCBI tax id
- NCBI tax id: 571915
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16079 | <- G. Funke, Labor Dr. Gärtner, Ravensburg, Germany; strain 3105 |
| 67770 | CCUG 57279 <-- G. Funke 3105. |
doi: 10.13145/bacdive3236.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium mustelae
- full scientific name: Corynebacterium mustelae Funke et al. 2010
@ref: 16079
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium mustelae
full scientific name: Corynebacterium mustelae Funke et al. 2010 emend. Nouioui et al. 2018
strain designation: 3105
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 29327 | positive | rod-shaped | ||
| 69480 | no | 93.061 | ||
| 69480 | positive | 100 |
pigmentation
- @ref: 29327
- production: yes
multimedia
- @ref: 16079
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45274.jpg
- caption: Medium 693 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16079 | TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) | yes | https://mediadive.dsmz.de/medium/535a | Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 16079 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16079 | positive | growth | 37 | mesophilic |
| 61271 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 29327 | facultative anaerobe |
| 61271 | microaerophile |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29327 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.991 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29327 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
| 29327 | 28757 | fructose | + | carbon source |
| 29327 | 33984 | fucose | + | carbon source |
| 29327 | 17234 | glucose | + | carbon source |
| 29327 | 17306 | maltose | + | carbon source |
| 29327 | 37684 | mannose | + | carbon source |
| 29327 | 506227 | N-acetylglucosamine | + | carbon source |
| 29327 | 33942 | ribose | + | carbon source |
| 29327 | 17992 | sucrose | + | carbon source |
| 29327 | 27082 | trehalose | + | carbon source |
| 29327 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29327 | catalase | + | 1.11.1.6 |
| 29327 | pyrazinamidase | + | 3.5.1.B15 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 16079 | necropsy lung tissue of a ferret with lethal sepsis | Switzerland | CHE | Europe | |
| 61271 | Ferret lung tissue,autopsy,Mustela putorius furo | Germany | DEU | Europe | Freiburg/Breisgau |
| 67770 | Necropsy lung tissue of a ferret with lethal sepsis |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Disease | |
| #Host | #Mammals | |
| #Host Body-Site | #Oral cavity and airways | #Lung |
Safety information
risk assessment
- @ref: 16079
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16079
- description: Corynebacterium mustelae strain 3105 16S ribosomal RNA gene, partial sequence
- accession: FJ374773
- length: 1474
- database: ena
- NCBI tax ID: 571915
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corynebacterium mustelae DSM 45274 | GCA_001020985 | complete | ncbi | 571915 |
| 66792 | Corynebacterium mustelae strain DSM 45274 | 571915.4 | complete | patric | 571915 |
| 66792 | Corynebacterium mustelae strain DSM 45274 | 571915.7 | plasmid | patric | 571915 |
| 66792 | Corynebacterium mustelae strain DSM 45274 | 571915.6 | plasmid | patric | 571915 |
GC content
- @ref: 67770
- GC-content: 52.6
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 93.787 | no |
| flagellated | no | 97.82 | no |
| gram-positive | yes | 92.171 | yes |
| anaerobic | no | 97.433 | yes |
| aerobic | no | 82.93 | yes |
| halophile | no | 68.547 | no |
| spore-forming | no | 85.647 | no |
| thermophile | no | 94.296 | no |
| glucose-util | yes | 85.414 | no |
| glucose-ferment | yes | 55.853 | no |
External links
@ref: 16079
culture collection no.: JCM 17318, DSM 45274, CCUG 57279
straininfo link
- @ref: 72750
- straininfo: 406439
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19661496 | Corynebacterium mustelae sp. nov., isolated from a ferret with lethal sepsis. | Funke G, Frodl R, Bernard KA | Int J Syst Evol Microbiol | 10.1099/ijs.0.010942-0 | 2009 | Animals, Autopsy/*veterinary, Bacterial Proteins/genetics, Bacterial Typing Techniques, Corynebacterium/*classification/genetics/*isolation & purification, Corynebacterium Infections/microbiology/*veterinary, DNA, Ribosomal/analysis/genetics, Ferrets/*microbiology, Genes, rRNA, Genotype, Lung/microbiology, Male, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sepsis/microbiology/*veterinary, Sequence Analysis, DNA, Species Specificity | Genetics |
| Genetics | 26358597 | Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis. | Ruckert C, Eimer J, Winkler A, Tauch A | Genome Announc | 10.1128/genomeA.01012-15 | 2015 | Phylogeny | |
| Phylogeny | 30688628 | Corynebacterium alimapuense sp. nov., an obligate marine actinomycete isolated from sediment of Valparaiso bay, Chile. | Claverias F, Gonzales-Siles L, Salva-Serra F, Inganas E, Molin K, Cumsille A, Undabarrena A, Couve E, Moore ERB, Tindall BJ, Gomila M, Camara B | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003237 | 2019 | Bacterial Typing Techniques, Base Composition, Bays, Chile, Corynebacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 16079 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45274) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45274 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 29327 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25739 | 28776041 | ||
| 61271 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 57279) | https://www.ccug.se/strain?id=57279 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
| 72750 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406439.1 | StrainInfo: A central database for resolving microbial strain identifiers |