Strain identifier
BacDive ID: 3180
Type strain:
Species: Corynebacterium falsenii
Strain Designation: BL 8171
Strain history: CIP <- 1998, G. Funke, Inst. Med. Mikrobiol., Zürich, Suisse: strain DMMZ 2537 <- E. Falsen, CCUG, Sweden
NCBI tax ID(s): 1451189 (strain), 108486 (species)
General
@ref: 11697
BacDive-ID: 3180
DSM-Number: 44353
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-positive, rod-shaped, pigmented
description: Corynebacterium falsenii BL 8171 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that has a yellow pigmentation and was isolated from blood culture, acute lymphatic leukaemia, 4-yr-old boy.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1451189 | strain |
108486 | species |
strain history
@ref | history |
---|---|
11697 | <- CCUG <- Public Health Laboratories, Karlstad, Göteborg, Sweden, BL 8171 |
67770 | CIP 105466 <-- G. Funke DMMZ 2537 <-- CCUG 33651 <-- Public Health Labs., Karlstad, Sweden; Bl 8171. |
119276 | CIP <- 1998, G. Funke, Inst. Med. Mikrobiol., Zürich, Suisse: strain DMMZ 2537 <- E. Falsen, CCUG, Sweden |
doi: 10.13145/bacdive3180.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium falsenii
- full scientific name: Corynebacterium falsenii Sjödén et al. 1998
@ref: 11697
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium falsenii
full scientific name: Corynebacterium falsenii Sjödén et al. 1998 emend. Nouioui et al. 2018
strain designation: BL 8171
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
23178 | positive | rod-shaped | no | |
119276 | positive | rod-shaped | no | |
69480 | positive | 90.71 | ||
69480 | no | 90.5 |
colony morphology
@ref | colony color | incubation period | medium used | colony size | colony shape |
---|---|---|---|---|---|
20048 | Ivory (1014) | 10-14 days | ISP 2 | ||
20048 | Ivory (1014) | 10-14 days | ISP 3 | ||
20048 | Ivory (1014) | 10-14 days | ISP 4 | ||
20048 | Ivory (1014) | 10-14 days | ISP 5 | ||
20048 | Ivory (1014) | 10-14 days | ISP 6 | ||
20048 | Ivory (1014) | 10-14 days | ISP 7 | ||
23178 | whitish | 1 -3 days | sheep blood agar | 2 mm | circular |
119276 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
20048 | no | ISP 2 |
20048 | no | ISP 3 |
20048 | no | ISP 4 |
20048 | no | ISP 5 |
20048 | no | ISP 6 |
20048 | no | ISP 7 |
pigmentation
- @ref: 23178
- production: yes
- color: yellow
multimedia
- @ref: 11697
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44353.jpg
- caption: Medium 535a 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11697 | TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) | yes | https://mediadive.dsmz.de/medium/535a | Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
11697 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
20048 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
20048 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
20048 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
20048 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
20048 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
20048 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
23178 | sheep blood agar | yes | ||
38552 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
119276 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 | |
119276 | CIP Medium 45 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45 | |
119276 | CIP Medium 9 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=9 | |
119276 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
20048 | positive | optimum | 37 |
11697 | positive | growth | 37 |
38552 | positive | growth | 37 |
67770 | positive | growth | 37 |
119276 | positive | growth | 15-45 |
119276 | no | growth | 10 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
23178 | facultative anaerobe |
119276 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
23178 | no | |
69481 | no | 91 |
halophily
- @ref: 119276
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23178 | 16808 | 2-dehydro-D-gluconate | - | builds acid from |
23178 | 15963 | ribitol | - | builds acid from |
23178 | 27613 | amygdalin | - | builds acid from |
23178 | 22599 | arabinose | - | builds acid from |
23178 | 18305 | arbutin | - | builds acid from |
23178 | 17057 | cellobiose | - | builds acid from |
23178 | 28847 | D-fucose | - | builds acid from |
23178 | 62318 | D-lyxose | - | builds acid from |
23178 | 16634 | raffinose | - | builds acid from |
23178 | 32528 | turanose | - | builds acid from |
23178 | 16813 | galactitol | - | builds acid from |
23178 | 17113 | erythritol | - | builds acid from |
23178 | 28066 | gentiobiose | - | builds acid from |
23178 | 24265 | gluconate | - | builds acid from |
23178 | 28087 | glycogen | - | builds acid from |
23178 | 17268 | myo-inositol | - | builds acid from |
23178 | 15443 | inulin | - | builds acid from |
23178 | 18403 | L-arabitol | - | builds acid from |
23178 | 29864 | mannitol | - | builds acid from |
23178 | 6731 | melezitose | - | builds acid from |
23178 | 28053 | melibiose | - | builds acid from |
23178 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
23178 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
23178 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
23178 | 506227 | N-acetylglucosamine | - | builds acid from |
23178 | 17814 | salicin | - | builds acid from |
23178 | 30911 | sorbitol | - | builds acid from |
23178 | 27922 | sorbose | - | builds acid from |
23178 | 17992 | sucrose | - | builds acid from |
23178 | 17151 | xylitol | - | builds acid from |
23178 | 18222 | xylose | - | builds acid from |
23178 | casein | - | hydrolysis | |
23178 | 4853 | esculin | - | hydrolysis |
23178 | 18186 | tyrosine | - | hydrolysis |
23178 | 15318 | xanthine | - | hydrolysis |
23178 | 16301 | nitrite | - | reduction |
23178 | 17426 | 5-dehydro-D-gluconate | + | builds acid from |
23178 | 28260 | galactose | + | builds acid from |
23178 | 17234 | glucose | + | builds acid from |
23178 | 17754 | glycerol | + | builds acid from |
23178 | 33942 | ribose | + | builds acid from |
23178 | 27082 | trehalose | + | builds acid from |
23178 | 16199 | urea | + | hydrolysis |
23178 | 16443 | D-tagatose | +/- | builds acid from |
23178 | 28757 | fructose | +/- | builds acid from |
23178 | 17716 | lactose | +/- | builds acid from |
23178 | 17306 | maltose | +/- | builds acid from |
23178 | 26546 | rhamnose | +/- | builds acid from |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | - | builds acid from |
68371 | 17992 | sucrose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 15824 | D-fructose | - | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
119276 | 16947 | citrate | - | carbon source |
119276 | 4853 | esculin | - | hydrolysis |
119276 | 17632 | nitrate | - | reduction |
119276 | 16301 | nitrite | - | reduction |
119276 | 17632 | nitrate | + | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
metabolite production
- @ref: 119276
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
119276 | 15688 | acetoin | - | |
119276 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23178 | acid phosphatase | + | 3.1.3.2 |
23178 | alkaline phosphatase | + | 3.1.3.1 |
23178 | alpha-fucosidase | - | 3.2.1.51 |
23178 | alpha-galactosidase | - | 3.2.1.22 |
23178 | alpha-glucosidase | - | 3.2.1.20 |
23178 | alpha-mannosidase | - | 3.2.1.24 |
23178 | beta-galactosidase | - | 3.2.1.23 |
23178 | beta-glucosidase | - | 3.2.1.21 |
23178 | beta-glucuronidase | - | 3.2.1.31 |
23178 | catalase | + | 1.11.1.6 |
23178 | chymotrypsin | - | 3.4.4.5 |
23178 | cystine arylamidase | +/- | 3.4.11.3 |
23178 | esterase (C 4) | + | |
23178 | esterase lipase (C 8) | + | |
23178 | leucine arylamidase | +/- | 3.4.11.1 |
23178 | lipase (C 14) | +/- | |
23178 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
23178 | phosphoamidase | + | 3.9.1.1 |
23178 | pyrazinamidase | + | 3.5.1.B15 |
23178 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
23178 | trypsin | - | 3.4.21.4 |
23178 | valine arylamidase | - | |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
119276 | oxidase | - | |
119276 | beta-galactosidase | - | 3.2.1.23 |
119276 | alcohol dehydrogenase | - | 1.1.1.1 |
119276 | gelatinase | - | |
119276 | amylase | + | |
119276 | DNase | - | |
119276 | caseinase | - | 3.4.21.50 |
119276 | catalase | + | 1.11.1.6 |
119276 | tween esterase | + | |
119276 | gamma-glutamyltransferase | - | 2.3.2.2 |
119276 | lecithinase | - | |
119276 | lipase | - | |
119276 | lysine decarboxylase | + | 4.1.1.18 |
119276 | ornithine decarboxylase | + | 4.1.1.17 |
119276 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
119276 | protease | - | |
119276 | tryptophan deaminase | - | |
119276 | urease | + | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20048 | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20048 | + | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - | |
119276 | + | + | + | + | - | - | - | - | - | + | + | - | - | - | + | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119276 | +/- | - | - | - | +/- | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119276 | + | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | + | - | - | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
11697 | blood culture, acute lymphatic leukaemia, 4-yr-old boy | Karlstad | Sweden | SWE | Europe | ||
23178 | human clinical specimens | ||||||
51655 | Human acute lymphatic leukaemia,4-yr-old boy | Karlstad | Sweden | SWE | Europe | 1994-11-18 | |
67770 | Blood culture (a 4 year-old boy suffering from acute lymphatic leukaemia) | ||||||
119276 | Human, Blood | Sweden | SWE | Europe | 1994 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | #Blood culture |
#Infection | #Patient | |
#Infection | #Patient | |
#Infection | #Medical environment | #Clinic |
#Infection | #Patient | #Specimen |
#Host | #Human | #Child |
#Host | #Human | #Male |
taxonmaps
- @ref: 69479
- File name: preview.99_2812.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_139;97_1784;98_2181;99_2812&stattab=map
- Last taxonomy: Corynebacterium falsenii subclade
- 16S sequence: Y13024
- Sequence Identity:
- Total samples: 1960
- soil counts: 38
- aquatic counts: 104
- animal counts: 1802
- plant counts: 16
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
11697 | 2 | Risk group (German classification) |
20048 | 2 | German classification |
119276 | 2 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 23178
- description: Corynebacterium falsenii 16S rRNA gene
- accession: Y13024
- length: 1475
- database: nuccore
- NCBI tax ID: 108486
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Corynebacterium falsenii DSM 44353 BL 8171 | GCA_000525655 | complete | ncbi | 1451189 |
66792 | Corynebacterium falsenii DSM 44353 | 1451189.3 | complete | patric | 1451189 |
66792 | Corynebacterium falsenii DSM 44353 strain BL 8171 | 1451189.4 | plasmid | patric | 1451189 |
66792 | Corynebacterium falsenii strain FDAARGOS_1494 | 108486.9 | complete | patric | 108486 |
66792 | Corynebacterium falsenii BL 8171, DSM 44353 | 2571042744 | complete | img | 1451189 |
66792 | Corynebacterium falsenii strain FDAARGOS_1494 | 108486.19 | complete | patric | 108486 |
66792 | Corynebacterium falsenii strain FDAARGOS_1494 | 108486.14 | complete | patric | 108486 |
66792 | Corynebacterium falsenii strain FDAARGOS_1494 | 108486.16 | complete | patric | 108486 |
GC content
- @ref: 67770
- GC-content: 63.18
- method: genome sequence analysis
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91 | no |
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.71 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.233 | yes |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 65.346 | yes |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 80.873 | yes |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.232 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90.5 | yes |
External links
@ref: 11697
culture collection no.: DSM 44353, CCUG 33651, LMG 19046, CCM 4913, CIP 105466, JCM 11949, ATCC BAA-596, DMMZ 2537
straininfo link
- @ref: 72696
- straininfo: 311070
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Pathogenicity | 9542078 | Description of some coryneform bacteria isolated from human clinical specimens as Corynebacterium falsenii sp. nov. | Sjoden B, Funke G, Izquierdo A, Akervall E, Collins MD | Int J Syst Bacteriol | 10.1099/00207713-48-1-69 | 1998 | Adult, Aged, Anti-Bacterial Agents/pharmacology, Child, Preschool, Corynebacterium/*classification/drug effects/genetics, Corynebacterium Infections/*diagnosis/drug therapy, Culture Media, DNA, Bacterial/analysis, Female, Humans, Male, Microbial Sensitivity Tests, Molecular Sequence Data, Phenotype | Phylogeny |
Genetics | 24604654 | Complete Genome Sequence of Corynebacterium falsenii DSM 44353 To Study the Evolution of Corynebacterium Cluster 3 Species. | Glaub A, Bomholt C, Gravermann K, Brinkrolf K, Albersmeier A, Ruckert C, Tauch A | Genome Announc | 10.1128/genomeA.00158-14 | 2014 | ||
Phylogeny | 29958724 | Corynebacterium heidelbergense sp. nov., isolated from the preen glands of Egyptian geese (Alopochen aegyptiacus). | Braun MS, Wang E, Zimmermann S, Wink M | Syst Appl Microbiol | 10.1016/j.syapm.2018.06.002 | 2018 | Animals, Bacterial Typing Techniques, Base Composition, Corynebacterium/*classification/genetics/isolation & purification, DNA Fingerprinting, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geese/*microbiology, Germany, Grooming, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sebaceous Glands/*microbiology, Sequence Analysis, DNA | Transcriptome |
Phylogeny | 33427608 | Corynebacterium anserum sp. nov., isolated from the faeces of greater white-fronted geese (Anser albifrons) at Poyang Lake, PR China. | Liu Q, Wu K, Fan G, Bai X, Yang X, Pan Y, Cao L, Song W, Chen S, Xiong Y, Chen H | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004637 | 2021 | Animals, Bacterial Typing Techniques, Base Composition, China, Corynebacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Geese/*microbiology, Lakes, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 34846289 | Corynebacterium zhongnanshanii sp. nov. isolated from trachea of Marmota himalayana, Corynebacterium lujinxingii sp. nov. and Corynebacterium wankanglinii sp. nov. from human faeces. | Zhang G, Yang J, Lai XH, Jin D, Lu S, Ren Z, Qin T, Pu J, Ge Y, Cheng Y, Yang C, Lv X, Jiao Y, Huang Y, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005069 | 2021 | Animals, Bacterial Typing Techniques, Base Composition, Corynebacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, *Marmota/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Trachea/microbiology, Vitamin K 2/analogs & derivatives/chemistry | Pathogenicity |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11697 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44353) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44353 | |||
20048 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM44353.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
23178 | Berit Sjödén, Guido Funke, Antonio Izquierdo, Eva Akervall, Matthew D. Collins | 10.1099/00207713-48-1-69 | Description of some coryneform bacteria isolated from human clinical specimens as Corynebacterium falsenii sp. nov. | IJSEM 48: 67-74 1998 | 9542078 | |
38552 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17488 | ||||
51655 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 33651) | https://www.ccug.se/strain?id=33651 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
72696 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID311070.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119276 | Curators of the CIP | Collection of Institut Pasteur (CIP 105466) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105466 |