Strain identifier

BacDive ID: 3123

Type strain: Yes

Species: Corynebacterium striatum

Strain history: CIP <- 1981, NCTC, Corynebacterium flavidum <- 1920, F.C. Minnett

NCBI tax ID(s): 525268 (strain), 43770 (species)

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General

@ref: 8990

BacDive-ID: 3123

DSM-Number: 20668

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped

description: Corynebacterium striatum DSM 20668 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from Unknown source.

NCBI tax id

NCBI tax idMatching level
525268strain
43770species

strain history

@refhistory
8990<- H. Seiler <- NCTC <- F.C. Minett
67770NCTC 764 <-- F. C. Minnett.
123327CIP <- 1981, NCTC, Corynebacterium flavidum <- 1920, F.C. Minnett

doi: 10.13145/bacdive3123.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium striatum
  • full scientific name: Corynebacterium striatum (Chester 1901) Eberson 1918 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium striatum

@ref: 8990

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium striatum

full scientific name: Corynebacterium striatum (Chester 1901) Eberson 1918 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

  • @ref: 123327
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refcolony colorincubation periodmedium used
18456Sand yellow (1002)10-14 daysISP 2
18456Colorless10-14 daysISP 4
18456Oyster white (1013)10-14 daysISP 5
18456Beige (1001)10-14 daysISP 6
18456Colorless10-14 daysISP 7
123327

multicellular morphology

@refforms multicellular complexmedium name
18456noISP 2
18456noISP 4
18456noISP 5
18456noISP 6
18456noISP 7

multimedia

  • @ref: 8990
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_20668.jpg
  • caption: Medium 535 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
18456ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18456ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18456ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
18456ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
18456ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
8990COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693
8990TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yesName: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/535
36915MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123327CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
18456positiveoptimum37mesophilic
8990positivegrowth37mesophilic
36915positivegrowth37mesophilic
67770positivegrowth37mesophilic
123327positivegrowth25-41
123327nogrowth10psychrophilic
123327nogrowth15psychrophilic
123327nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123327
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
18456NaClpositivemaximum7.5 %
123327NaClpositivegrowth0-8 %
123327NaClnogrowth10 %

murein

  • @ref: 8990
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1845617234glucose+
1845622599arabinose+/-
1845617992sucrose+/-
1845618222xylose+/-
1845617268myo-inositol+/-
1845629864mannitol+/-
1845628757fructose+
1845626546rhamnose+/-
1845616634raffinose+/-
1845662968cellulose-
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
12332716947citrate-carbon source
1233274853esculin-hydrolysis
12332717632nitrate+reduction
12332716301nitrite-reduction
12332717632nitrate+respiration
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917716lactose-fermentation
6837928087glycogen-fermentation
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose-builds acid from
6837717992sucrose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 123327
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
12332735581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837735581indole-
6836815688acetoin+
6836835581indole-
12332715688acetoin-
12332717234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase+3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
123327oxidase-
123327beta-galactosidase-3.2.1.23
123327alcohol dehydrogenase-1.1.1.1
123327gelatinase-
123327amylase+
123327DNase-
123327caseinase-3.4.21.50
123327catalase+1.11.1.6
123327tween esterase-
123327lecithinase-
123327lipase-
123327lysine decarboxylase-4.1.1.18
123327ornithine decarboxylase-4.1.1.17
123327protease-
123327tryptophan deaminase-
123327urease-3.5.1.5

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYGControlCAT
18456---+---------------
8990+--+-------+-----+--+
8990++-+-------+---+/--+--+

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18456+-+-+-++++---------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARA
18456---------+-+----+---

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
49045-++-+-----+--

Isolation, sampling and environmental information

isolation

  • @ref: 123327
  • sample type: Unknown source
  • isolation date: 1920

taxonmaps

  • @ref: 69479
  • File name: preview.99_879.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_525;97_604;98_694;99_879&stattab=map
  • Last taxonomy: Corynebacterium striatum
  • 16S sequence: X84442
  • Sequence Identity:
  • Total samples: 15392
  • soil counts: 471
  • aquatic counts: 540
  • animal counts: 14155
  • plant counts: 226

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
184562German classification
89902Risk group (German classification)
1233272Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Corynebacterium striatum partial 16S rRNA gene, type strain ATCC 6940THE5862701301ena43770
20218C.striatum 16S rRNA gene (CIP 81.15T)X819101324ena43770
20218Corynebacterium striatum gene for 16S rRNA, partial sequenceD63354506ena43770
20218Corynebacterium striatum gene for 16S rRNA, partial sequenceAB470622542ena43770
8990Corynebacterium striatum partial 16S rRNA gene, strain NCTC 764X844421477ena43770

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium striatum ATCC 6940525268.3wgspatric525268
66792Corynebacterium striatum strain FDAARGOS_105443770.1233completepatric43770
66792Corynebacterium striatum strain NBRC 1529143770.812wgspatric43770
66792Corynebacterium striatum strain NCTC76443770.659wgspatric43770
66792Corynebacterium striatum NCTC 7642916407222draftimg43770
66792Corynebacterium striatum ATCC 6940643886057draftimg525268
67770Corynebacterium striatum ATCC 6940GCA_000159135scaffoldncbi525268
67770Corynebacterium striatum NBRC 15291GCA_006538485contigncbi43770
67770Corynebacterium striatum NCTC764GCA_900447675contigncbi43770

GC content

@refGC-contentmethod
899057.6
6777057.6thermal denaturation, midpoint method (Tm)
6777059.4genome sequence analysis
6777061high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes93.627no
anaerobicno98.801no
halophileyes77.468no
spore-formingno95.029no
glucose-utilyes88.478yes
aerobicno67.978no
flagellatedno97.724no
thermophileno95.353yes
motileno93.74no
glucose-fermentyes74.558yes

External links

@ref: 8990

culture collection no.: DSM 20668, ATCC 6940, NCTC 764, CCUG 27949, CIP 81.15, IFO 15291, JCM 9390, CECT 4159, LMG 19648, NBRC 15291

straininfo link

  • @ref: 72640
  • straininfo: 13142

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism2298880Native valve endocarditis caused by an organism resembling Corynebacterium striatum.Markowitz SM, Coudron PEJ Clin Microbiol10.1128/jcm.28.1.8-10.19901990Aged, *Aortic Valve, Corynebacterium/isolation & purification/metabolism, Corynebacterium Infections/*microbiology/pathology, Endocarditis, Bacterial/*microbiology/pathology, Heart Valve Diseases/microbiology/pathology, Humans, Male, Nitrites/metabolismPathogenicity
Pathogenicity15855486Relationship between mutations in the gyrA gene and quinolone resistance in clinical isolates of Corynebacterium striatum and Corynebacterium amycolatum.Sierra JM, Martinez-Martinez L, Vazquez F, Giralt E, Vila JAntimicrob Agents Chemother10.1128/AAC.49.5.1714-1719.20052005Amino Acid Sequence, Anti-Infective Agents/*pharmacology, Corynebacterium/*drug effects, Corynebacterium Infections/*microbiology, DNA Gyrase/*genetics, Drug Resistance, Bacterial, Fluoroquinolones/*pharmacology, Humans, Microbial Sensitivity Tests, Molecular Sequence Data, Mutation/*genetics, Polymorphism, Restriction Fragment LengthGenetics
Phylogeny18562580Multicenter evaluation of the Vitek 2 anaerobe and Corynebacterium identification card.Rennie RP, Brosnikoff C, Turnbull L, Reller LB, Mirrett S, Janda W, Ristow K, Krilcich AJ Clin Microbiol10.1128/JCM.00450-082008Bacteria, Anaerobic/*isolation & purification, Bacterial Typing Techniques/*methods, Corynebacterium/*isolation & purification, DNA, Bacterial/genetics, Humans, RNA, Ribosomal, 16S/genetics, Reproducibility of Results, Sensitivity and Specificity, Sequence Analysis, DNAEnzymology
Pathogenicity30550229A Novel Approach to Study the Effect of Ciprofloxacin on Biofilms of Corynebacterium spp. Using Confocal Laser Scanning Microscopy.Olender A, Bogut A, Magrys A, Krol-Turminska KPol J Microbiol10.21307/pjm-2018-0512018Anti-Bacterial Agents/*pharmacology, Biofilms/*drug effects, Ciprofloxacin/*pharmacology, Corynebacterium/*drug effects, Microbial Sensitivity Tests, *Microscopy, Confocal
30655682Molecular epidemiology and clinical significance of Corynebacterium striatum isolated from clinical specimens.Suh JW, Ju Y, Lee CK, Sohn JW, Kim MJ, Yoon YKInfect Drug Resist10.2147/IDR.S1845182019

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8990Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20668)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20668
18456Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM20668.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36915Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11173
49045Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27949)https://www.ccug.se/strain?id=27949
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68377Automatically annotated from API NH
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72640Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13142.1StrainInfo: A central database for resolving microbial strain identifiers
123327Curators of the CIPCollection of Institut Pasteur (CIP 81.15)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2081.15