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Strain identifier

BacDive ID: 3056

Type strain: Yes

Species: Eggerthella sinensis

Strain Designation: HKU14

Strain history: LMG 22123 <-- S. K. P. Lau HKU14.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6297

BacDive-ID: 3056

DSM-Number: 16107

keywords: mesophilic, anaerobe, Bacteria, 16S sequence, genome sequence, human pathogen

description: Eggerthella sinensis HKU14 is an anaerobe, mesophilic human pathogen that was isolated from blood.

NCBI tax id

NCBI tax idMatching level
883107strain
242230species

strain history

doi: 10.13145/bacdive3056.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Eggerthellales
  • family: Eggerthellaceae
  • genus: Eggerthella
  • species: Eggerthella sinensis
  • full scientific name: Eggerthella sinensis Lau et al. 2006

@ref: 6297

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Eggerthellaceae

genus: Eggerthella

species: Eggerthella sinensis

full scientific name: Eggerthella sinensis Lau et al. 2006 emend. Maruo et al. 2008

strain designation: HKU14

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6297
  • name: CHOPPED MEAT MEDIUM (DSMZ Medium 78)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/78
  • composition: Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
6297positivegrowth37mesophilic
60581positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6297anaerobe
60581anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan-energy source
6838017632nitrate-reduction
6838029985L-glutamate-degradation
6838016634raffinose-fermentation
6838016024D-mannose-fermentation
6838029016arginine+hydrolysis
6838016199urea-hydrolysis

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
6297-+---------------+/------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6297bloodHong KongHKGAsia
60581Human blood,patient with acute proctitisHong KongHKGAsia
67770Blood cultures

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Infection#Patient

Safety information

risk assessment

  • @ref: 6297
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6297
  • description: Eggerthella sinensis strain HKU14 16S ribosomal RNA gene, partial sequence
  • accession: AY321958
  • length: 1429
  • database: ena
  • NCBI tax ID: 883107

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Eggerthella sinensis DSM 16107GCA_003339815contigncbi242230
66792Eggerthella sinensis DSM 16107GCA_003725965contigncbi242230
66792Eggerthella sinensis strain DSM 16107242230.3wgspatric242230
66792Eggerthella sinensis strain DSM 16107242230.4wgspatric242230
66792Eggerthella sinensis DSM 161072866206833draftimg242230
66792Eggerthella sinensis DSM 161072866341438draftimg242230
67770Eggerthella sinensis strain DSM 16107, whole genome shotgun sequencing projectPPTT00000000ncbi242230
67770Eggerthella sinensis strain DSM 16107, whole genome shotgun sequencing projectQICC00000000ncbi242230

External links

@ref: 6297

culture collection no.: CCUG 55421, JCM 14551, DSM 16107, LMG 22123

straininfo link

@refpassport
20218http://www.straininfo.net/strains/689753
20218http://www.straininfo.net/strains/370988

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18450717Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella.Maruo T, Sakamoto M, Ito C, Toda T, Benno YInt J Syst Evol Microbiol10.1099/ijs.0.65404-02008Bacterial Typing Techniques, Cytophagaceae/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Equol, Feces/*microbiology, Genes, rRNA, Genotype, Humans, Isoflavones/*biosynthesis/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny23869769Isolation and characterization of novel S-equol-producing bacteria from brines of stinky tofu, a traditional fermented soy food in Taiwan.Abiru Y, Ueno T, Uchiyama SInt J Food Sci Nutr10.3109/09637486.2013.8169362013Actinobacteria/genetics/*metabolism, *DNA, Bacterial, Diet, Equol/*metabolism, Fermentation, *Food Microbiology, Humans, Isoflavones/metabolism, Phylogeny, RNA, Ribosomal, 16S, Salts, Soy Foods/*microbiology, Soybeans/*metabolism/microbiology, TaiwanMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6297Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16107)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16107
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
60581Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55421)https://www.ccug.se/strain?id=55421
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A