Strain identifier

BacDive ID: 303

Type strain: No

Species: Achromobacter deleyi

Strain history: <- CCUG <- B. Jönsson, PHLS, Göteborg, Sweden

NCBI tax ID(s): 1353891 (species)

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General

@ref: 18156

BacDive-ID: 303

DSM-Number: 26072

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Achromobacter deleyi DSM 26072 is a mesophilic human pathogen that was isolated from human sputum, cystic fibrosis patient.

NCBI tax id

  • NCBI tax id: 1353891
  • Matching level: species

strain history

  • @ref: 18156
  • history: <- CCUG <- B. Jönsson, PHLS, Göteborg, Sweden

doi: 10.13145/bacdive303.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter deleyi
  • full scientific name: Achromobacter deleyi Vandamme et al. 2016

@ref: 18156

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter deleyi

full scientific name: Achromobacter deleyi Vandamme et al. 2016

type strain: no

Morphology

colony morphology

  • @ref: 18156
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18156CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
18156NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
57998positivegrowth37mesophilic
18156positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
18156catalase+1.11.1.6
18156cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57998-++--+----+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
18156+-----+-+-+/----++++++
57998+-------+-----+--++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
18156human sputum, cystic fibrosis patientGöteborgSwedenSWEEurope
57998Human sputum,cystic fibrosis patientGöteborgSwedenSWEEurope2003-09-01

isolation source categories

Cat1Cat2Cat3
#Infection#Disease#Cystic fibrosis
#Infection#Patient
#Host#Human
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

  • @ref: 18156
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Achromobacter deleyi strain FDAARGOS_1050
  • accession: 1353891.12
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1353891

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.346no
gram-positiveno98.277no
anaerobicno98.239no
halophileno90.098no
spore-formingno93.644no
thermophileno99.811yes
glucose-utilyes57.274yes
flagellatedno61.451no
aerobicyes87.979no
glucose-fermentno89.941no

External links

@ref: 18156

culture collection no.: DSM 26072, CCUG 48135

straininfo link

  • @ref: 69985
  • straininfo: 214928

Reference

@idauthorscataloguedoi/urltitle
18156Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26072)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26072
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
57998Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48135)https://www.ccug.se/strain?id=48135
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69985Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID214928.1StrainInfo: A central database for resolving microbial strain identifiers