Strain identifier
BacDive ID: 3020
Type strain: 
Species: Xenophilus aerolatus
Strain Designation: 5516S-2
Strain history: <- S.-W. Kwon, KACC; 5516S-2 <- H.-Y. Weon
NCBI tax ID(s): 452922 (species)
version 8.1 (current version)
General
@ref: 8098
BacDive-ID: 3020
DSM-Number: 19424
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Xenophilus aerolatus 5516S-2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from air.
NCBI tax id
- NCBI tax id: 452922
- Matching level: species
strain history
- @ref: 8098
- history: <- S.-W. Kwon, KACC; 5516S-2 <- H.-Y. Weon
doi: 10.13145/bacdive3020.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Xenophilus
- species: Xenophilus aerolatus
- full scientific name: Xenophilus aerolatus Kim et al. 2010
@ref: 8098
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Xenophilus
species: Xenophilus aerolatus
full scientific name: Xenophilus aerolatus Kim et al. 2010
strain designation: 5516S-2
type strain: yes
Morphology
cell morphology
- @ref: 29439
- gram stain: negative
- cell length: 1.2 µm
- cell width: 0.7 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29439
- production: yes
Culture and growth conditions
culture medium
- @ref: 8098
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8098 | positive | growth | 28 | mesophilic |
| 29439 | positive | growth | 10-35 | |
| 29439 | positive | optimum | 27.5 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29439 | positive | growth | 05-09 | alkaliphile |
| 29439 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29439
- oxygen tolerance: aerobe
spore formation
- @ref: 29439
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29439 | NaCl | positive | growth | 0-2 % |
| 29439 | NaCl | positive | optimum | 0.5 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29439 | 23652 | dextrin | + | carbon source |
| 29439 | 15740 | formate | + | carbon source |
| 29439 | 17992 | sucrose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29439 | alkaline phosphatase | + | 3.1.3.1 |
| 29439 | catalase | + | 1.11.1.6 |
| 29439 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 8098
- sample type: air
- geographic location: Suwon City, outdoor region
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
taxonmaps
- @ref: 69479
- File name: preview.99_7561.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_308;97_1013;98_5541;99_7561&stattab=map
- Last taxonomy: Variovorax
- 16S sequence: EF660342
- Sequence Identity:
- Total samples: 4981
- soil counts: 2979
- aquatic counts: 583
- animal counts: 557
- plant counts: 862
Safety information
risk assessment
- @ref: 8098
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8098
- description: Xenophilus aerolatus strain 5516S-2 16S ribosomal RNA gene, partial sequence
- accession: EF660342
- length: 1407
- database: ena
- NCBI tax ID: 452922
GC content
| @ref | GC-content | method |
|---|---|---|
| 8098 | 69 | high performance liquid chromatography (HPLC) |
| 29439 | 69 |
External links
@ref: 8098
culture collection no.: DSM 19424, KACC 12602
straininfo link
- @ref: 72542
- straininfo: 399832
literature
- topic: Phylogeny
- Pubmed-ID: 19651735
- title: Xenophilus aerolatus sp. nov., isolated from air.
- authors: Kim SJ, Kim YS, Weon HY, Anandham R, Noh HJ, Kwon SW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.013185-0
- year: 2009
- mesh: *Air Microbiology, Base Composition, Base Sequence, Comamonadaceae/*classification/genetics/physiology, DNA, Bacterial/chemistry, Korea, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, RNA
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 8098 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19424) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19424 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29439 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25845 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72542 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399832.1 | StrainInfo: A central database for resolving microbial strain identifiers |