Strain identifier
BacDive ID: 3005
Type strain: 
Species: Variovorax paradoxus
Strain history: <- M.P. Starr, ICPB <- D. Davis
NCBI tax ID(s): 34073 (species)
version 9 (current version)
General
@ref: 534
BacDive-ID: 3005
DSM-Number: 1072
keywords: 16S sequence, Bacteria
description: Variovorax paradoxus DSM 1072 is a bacterium of the family Comamonadaceae.
NCBI tax id
- NCBI tax id: 34073
- Matching level: species
strain history
- @ref: 534
- history: <- M.P. Starr, ICPB <- D. Davis
doi: 10.13145/bacdive3005.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Variovorax
- species: Variovorax paradoxus
- full scientific name: Variovorax paradoxus (Davis 1969) Willems et al. 1991
synonyms
- @ref: 20215
- synonym: Alcaligenes paradoxus
@ref: 534
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Variovorax
species: Variovorax paradoxus
full scientific name: Variovorax paradoxus (Davis 1969) Willems et al. 1991
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 534 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 534 | MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) | yes | https://mediadive.dsmz.de/medium/81 | Name: MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) Composition: Agar 20.1005 g/l Na2HPO4 x 2 H2O 2.91457 g/l KH2PO4 2.31156 g/l NH4Cl 1.00503 g/l MgSO4 x 7 H2O 0.502512 g/l Ferric ammonium citrate 0.0502513 g/l CaCl2 x 2 H2O 0.0100503 g/l NaVO3 x H2O 0.00502512 g/l Calcium pantothenate 0.00251256 g/l Pyridoxine hydrochloride 0.00251256 g/l Nicotinic acid 0.00251256 g/l Thiamine-HCl x 2 H2O 0.00251256 g/l H3BO3 0.00150754 g/l CoCl2 x 6 H2O 0.00100503 g/l Riboflavin 0.000502513 g/l ZnSO4 x 7 H2O 0.000502513 g/l MnCl2 x 4 H2O 0.000150754 g/l Na2MoO4 x 2 H2O 0.000150754 g/l NiCl2 x 6 H2O 0.000100503 g/l CuCl2 x 2 H2O 5.02513e-05 g/l Vitamin B12 5.02513e-05 g/l Folic acid 1.00503e-05 g/l Biotin 5.02513e-06 g/l Distilled water |
culture temp
- @ref: 534
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_2305.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_308;97_342;98_387;99_2305&stattab=map
- Last taxonomy: Variovorax
- 16S sequence: AB622222
- Sequence Identity:
- Total samples: 9717
- soil counts: 3106
- aquatic counts: 2157
- animal counts: 2122
- plant counts: 2332
Safety information
risk assessment
- @ref: 534
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Variovorax paradoxus gene for 16S rRNA, partial sequence, strain: DSM 1072 | AB622222 | 1481 | nuccore | 34073 |
| 20218 | Variovorax paradoxus DNA, 16S-23S rRNA gene internal transcribed spacer, strain: DSM 1072 | AB622232 | 633 | nuccore | 34073 |
External links
@ref: 534
culture collection no.: DSM 1072, ICPB 2923-449
straininfo link
- @ref: 72527
- straininfo: 47319
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 534 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1072) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1072 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72527 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47319.1 | StrainInfo: A central database for resolving microbial strain identifiers |