Strain identifier
BacDive ID: 2986
Type strain:
Species: Polaromonas glacialis
Strain Designation: Cr4-12
Strain history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; Cr4-12
NCBI tax ID(s): 866564 (species)
General
@ref: 17431
BacDive-ID: 2986
DSM-Number: 24062
keywords: 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, coccus-shaped
description: Polaromonas glacialis Cr4-12 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from glacier cryoconite.
NCBI tax id
- NCBI tax id: 866564
- Matching level: species
strain history
- @ref: 17431
- history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; Cr4-12
doi: 10.13145/bacdive2986.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Polaromonas
- species: Polaromonas glacialis
- full scientific name: Polaromonas glacialis Margesin et al. 2012
@ref: 17431
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Polaromonas
species: Polaromonas glacialis
full scientific name: Polaromonas glacialis Margesin et al. 2012
strain designation: Cr4-12
type strain: yes
Morphology
cell morphology
- @ref: 23091
- gram stain: negative
- cell length: 0.8-1.0 µm
- cell width: 0.6-0.8 µm
- cell shape: coccus-shaped
- motility: no
colony morphology
@ref | incubation period | colony size | colony color | colony shape | medium used |
---|---|---|---|---|---|
17431 | >14 days | ||||
23091 | 14 days | 1.0-1.5 mm | creamy white | circular | R2A agar |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
23091 | Nutrient agar (NA) | yes | ||
23091 | Reasoner's 2A agar (R2A) | yes | containing (l-1) 0.5 g yeast extract, 0.5 g peptone, 0.5 g Casamino acids, 0.5 g glucose, 0.5 g starch, 0.3 g sodium pyruvate, 0.3 g K2HPO4, 0.05 g MgSO4 and 15.0 g agar (pH 7) | |
23091 | tryptone soy agar | yes | ||
17431 | R2A MEDIUM (DSMZ Medium 830) | yes | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water | https://mediadive.dsmz.de/medium/830 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17431 | positive | growth | 20 | psychrophilic |
23091 | no | growth | 30.0 | mesophilic |
23091 | positive | growth | 1.0 | psychrophilic |
23091 | positive | growth | 1.0-25.0 |
culture pH
@ref | ability | type | pH |
---|---|---|---|
23091 | positive | growth | 6.0-7.0 |
23091 | no | growth | 8.0 |
Physiology and metabolism
oxygen tolerance
- @ref: 23091
- oxygen tolerance: aerobe
halophily
- @ref: 23091
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0.0-1.0 %(w/v)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23091 | 16947 | citrate | - | carbon source |
23091 | 27897 | tryptophan | - | energy source |
23091 | 27613 | amygdalin | - | fermentation |
23091 | 17634 | D-glucose | - | fermentation |
23091 | 16899 | D-mannitol | - | fermentation |
23091 | 17268 | myo-inositol | - | fermentation |
23091 | 30849 | L-arabinose | - | fermentation |
23091 | 62345 | L-rhamnose | - | fermentation |
23091 | 28053 | melibiose | - | fermentation |
23091 | 30911 | sorbitol | - | fermentation |
23091 | 17992 | sucrose | - | fermentation |
23091 | 17128 | adipate | - | growth |
23091 | 27689 | decanoate | - | growth |
23091 | 17108 | D-arabinose | - | growth |
23091 | 17634 | D-glucose | - | growth |
23091 | 16899 | D-mannitol | - | growth |
23091 | 16024 | D-mannose | - | growth |
23091 | 17924 | D-sorbitol | - | growth |
23091 | 30849 | L-arabinose | - | growth |
23091 | 25115 | malate | - | growth |
23091 | 17306 | maltose | - | growth |
23091 | 17268 | myo-inositol | - | growth |
23091 | 506227 | N-acetylglucosamine | - | growth |
23091 | 18401 | phenylacetate | - | growth |
23091 | 32032 | potassium gluconate | - | growth |
23091 | 17814 | salicin | - | growth |
23091 | 53258 | sodium citrate | - | growth |
23091 | 17992 | sucrose | - | growth |
23091 | 4853 | esculin | - | hydrolysis |
23091 | 5291 | gelatin | - | hydrolysis |
23091 | 53423 | tween 40 | + | growth |
23091 | 53426 | tween 80 | + | growth |
23091 | 17632 | nitrate | + | reduction |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23091 | 35581 | indole | no |
23091 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | citrate test |
---|---|---|---|---|
23091 | 35581 | indole | - | |
23091 | 16947 | citrate | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23091 | acid phosphatase | + | 3.1.3.2 |
23091 | alkaline phosphatase | + | 3.1.3.1 |
23091 | alpha-chymotrypsin | - | 3.4.21.1 |
23091 | alpha-fucosidase | - | 3.2.1.51 |
23091 | alpha-galactosidase | - | 3.2.1.22 |
23091 | alpha-glucosidase | - | 3.2.1.20 |
23091 | alpha-mannosidase | - | 3.2.1.24 |
23091 | amylase | + | |
23091 | arginine dihydrolase | - | 3.5.3.6 |
23091 | beta-galactosidase | - | 3.2.1.23 |
23091 | beta-glucosidase | - | 3.2.1.21 |
23091 | catalase | + | 1.11.1.6 |
23091 | cytochrome oxidase | + | 1.9.3.1 |
23091 | leucine arylamidase | + | 3.4.11.1 |
23091 | lipase (C 14) | + | |
23091 | lysine decarboxylase | - | 4.1.1.18 |
23091 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
23091 | naphthol-AS-BI-phosphohydrolase | + | |
23091 | ornithine decarboxylase | - | 4.1.1.17 |
23091 | trypsin | - | 3.4.21.4 |
23091 | tryptophan deaminase | - | 4.1.99.1 |
23091 | urease | - | 3.5.1.5 |
23091 | valine arylamidase | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
17431 | glacier cryoconite | Upper Tauern, Pasterze/Großglockner glacier | Austria | AUT | Europe |
23091 | alpine glacier cryoconite | Pasterze/Großglockner glacier in the Hohe Tauern (at an altitude of 2200 m above sea level) |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Glacier |
#Condition | #Psychrophilic (<10°C) | |
#Climate | #Cold | #Alpine |
#Environmental | #Terrestrial | #Geologic |
taxonmaps
- @ref: 69479
- File name: preview.99_1546.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_884;97_1032;98_1221;99_1546&stattab=map
- Last taxonomy: Polaromonas
- 16S sequence: HM583568
- Sequence Identity:
- Total samples: 2817
- soil counts: 683
- aquatic counts: 1647
- animal counts: 380
- plant counts: 107
Safety information
risk assessment
- @ref: 17431
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17431
- description: Polaromonas glacialis strain Cr4-12 16S ribosomal RNA gene, partial sequence
- accession: HM583568
- length: 1489
- database: ena
- NCBI tax ID: 866564
GC content
- @ref: 17431
- GC-content: 61.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 17431
culture collection no.: DSM 24062, KACC 15089, LMG 26049
straininfo link
- @ref: 72508
- straininfo: 399330
literature
- topic: Phylogeny
- Pubmed-ID: 22199222
- title: Polaromonas glacialis sp. nov. and Polaromonas cryoconiti sp. nov., isolated from alpine glacier cryoconite.
- authors: Margesin R, Sproer C, Zhang DC, Busse HJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.037556-0
- year: 2011
- mesh: Austria, Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Ice Cover/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, Putrescine/analogs & derivatives/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analysis
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
17431 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24062) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24062 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
23091 | Rosa Margesin,Cathrin Spröer,De-Chao Zhang,Hans-Jürgen Busse | 10.1099/ijs.0.037556-0 | Polaromonas glacialis sp. nov. and Polaromonas cryoconiti sp. nov., isolated from alpine glacier cryoconite | IJSEM 62: 2662-2668 2012 | 22199222 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
72508 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399330.1 | StrainInfo: A central database for resolving microbial strain identifiers |